セミナー
605 イベント
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Loop structure via one sided loop extrusion with twist deformation
2022年9月1日(木) 16:00 - 17:00
横田 宏 (数理創造プログラム 特別研究員)
During cell division, a chromatin fiber condenses into the rod-like shape which is so called chromosome. The chromosome is composed of consecutive loop structures. Many researchers have been interested in the loop formation mechanism. The loop extrusion is the one of the promising hypotheses. However, the only loop extrusion does not completely explain the chromosome condensation dynamics. In order to tackle this problem, we constructed a mechanical model of the loop formation dynamics by focusing on the twist and writhe structures in DNA or chromatin. In this talk, I would like to explain the loop extrusion mechanism and our model.
会場: via Zoom
イベント公式言語: 英語
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セミナー
Study of the eta' meson in nuclei in the LEPS2/BGOegg experiment
2022年8月26日(金) 16:30 - 18:00
冨田 夏希 (京都大学 大学院理学研究科 附属サイエンス連携探索センター (SACRA) 特定助教)
A large mass reduction of eta'(958) meson in nuclear medium owing to its UA(1) anomaly is expected in several model calculations. We carried out the LEPS2/BGOegg experiment at SPring-8 to study eta' meson properties in nuclei. If there is a large mass reduction in nuclei, an eta' meson and a nucleus may form a bound state. We searched for the eta'-nucleus bound states via missing mass spectroscopy of the 12C(gamma, p) reaction. To suppress background events from multi-meson production, we simultaneously measured decay products from the eta'-nucleus system for the first time. We also carried out the missing mass spectroscopy simultaneously detecting an eta' meson escaping from a nucleus for the first time. We will show the experimental results and comparisons with theoretical calculations. We will also show the preliminary results of the line shape analysis of the invariant mass spectra of the eta'->2gamma decay in the gamma+12C->eta'+X reaction.
会場: コモンルーム (246-248号室) (メイン会場) / via Zoom
イベント公式言語: 英語
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セミナー
Testing Astrophysical Models from the Shadow of the Galactic Center Black Hole
2022年8月26日(金) 14:00 - 15:00
水野 陽介 (T.D. Lee Fellow / Associate Professor, Tsung-Dao Lee Institute, Shanghai Jiao Tong University, China)
We present the first Event Horizon Telescope (EHT) observations of Sagittarius A* (Sgr A*), the Galactic center source associated with a supermassive black hole. These observations were conducted in 2017 using a global interferometric array of eight telescopes operating at a wavelength 1.3 mm. A variety of imaging and modeling analyses all support an image that is dominated by a bright, thick ring with a diameter of ~50 micro-arcsecond. Using a large suite of numerical simulations, we demonstrate that the EHT images of Sgr A* are consistent with the expected appearance of a Kerr black hole with mass ∼4 million solar mass, which is inferred to exist at this location based on previous infrared observations of individual stellar orbits, as well as maser proper-motion studies. Our model comparisons disfavor scenarios where the black hole is viewed at high inclination (i > 50 deg), as well as non-spinning black holes and those with retrograde accretion disks. Our results provide direct evidence for the presence of a supermassive black hole at the center of the Milky Way. In this talk, I will focus on more theoretical interpretation and model comparison to understand the accretion flow properties nearby Sgr A*.
会場: via Zoom
イベント公式言語: 英語
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セミナー
A rooted phylogeny of bacteria resolves early evolution
2022年8月25日(木) 16:00 - 17:00
Adrian Davin (東京大学 大学院理学系研究科 生物科学専攻 JSPS海外特別研究員)
Bacteria are the most diverse life forms on Earth and yet, we know surprisingly little about their early evolution. In this talk, I will explain how phylogenetic reconciliations and models of genome evolution can be used to answer some of the most interesting open questions in biology, such as the nature of the last bacterial common ancestor or whether a tree is a meaningful representation of evolution in the presence of abundant lateral gene transfer.
会場: via Zoom
イベント公式言語: 英語
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セミナー
How does subatomic matter organize itself? A low-energy nuclear physics perspective
2022年8月3日(水) 16:30 - 18:00
Xavier Roca-Maza (Associate Professor, Department of Physics, University of Milan, Italy / Sezione di Milano, INFN, Italy)
This seminar is a part of the RCNP workshop (RCNP研究会「低エネルギー核物理と高エネルギー天文学で読み解く中性子星」). Those who want to attend this seminar are required to register for the workshop by July 31. This seminar is supported by Gravitational Wave and Equation of State Working Group (GW-EOS WG), RIKEN iTHEMS.
会場: 大阪大学 核物理研究センター (RCNP) (メイン会場) / via Zoom
イベント公式言語: 英語
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セミナー
Product Replacement Algorithm, Semidefinite Programming, and Operator Algebras
2022年8月2日(火) 16:00 - 17:00
小澤 登高 (京都大学 数理解析研究所 (RIMS) 教授)
Suppose you are given a large finite set G and want to estimate the size |G| or see how a typical element x in G looks like. In this talk, G will be a finite group generated by g_1,...,g_d. The "Product" Replacement Algorithm" is a popular algorithm for random sampling in the group G. The PRA shows outstanding performance in practice, but the theoretical explanation has remained mysterious. I will talk how an infinite-dimensional topological-algebraic analysis (operator algebra theory) connects this problem to a convex (semidefinite) optimization problem that can be rigorously solved by computer. This talk is intended for a general audience.
会場: コモンルーム 246-248号室 とZoomのハイブリッド開催
イベント公式言語: 英語
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セミナー
Test of the Cosmological principle by observing the primordial gravitational waves
2022年7月27日(水) 13:30 - 15:00
浦川 優子 (高エネルギー加速器研究機構 (KEK) 准教授)
In this talk, using the generalized deltaN formalism, which dramatically facilitates a computation of the primordial density perturbation and the primordial GWs (PGWs), we address a violation of the Cosmological principle, namely a violation of the global isotropy in the Universe. It’s turned out that measuring the PGWs provides a powerful tool to explore a violation of the global isotropy. If time permits, I will also discuss some prospects on LiteBIRD.
会場: コモンルーム 246-248号室 とZoomのハイブリッド開催
イベント公式言語: 英語
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セミナー
Introduction to instanton knot homology
2022年7月25日(月) 16:00 - 18:00
井森 隼人 (京都大学 大学院理学研究科 数学・数理解析専攻 博士課程)
Floer theory is an infinite-dimensional version of Morse theory and has provided powerful invariants in the study of low-dimensional topology. In the context of Yang-Mills gauge theory, some versions of Floer homology groups for knots have been developed. These knot invariants are called instanton knot homology groups and are strongly related to representations of the fundamental group of the knot complement. In this talk, the speaker introduces basic constructions of instanton knot homology groups and recent developments related to the equivariant version of instanton knot homology theory.
会場: コモンルーム 246-248号室 とZoomのハイブリッド開催
イベント公式言語: 英語
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セミナー
Superconducting-like heat current: Effective cancellation of current-dissipation trade-off by quantum coherence
2022年7月25日(月) 13:30 - 15:00
田島 裕康 (電気通信大学 大学院情報理工学研究科 助教)
Recent developments in statistical mechanics have revealed a tradeoff between heat current and dissipation [1,2]. In various situations, this current-dissipation tradeoff represents a relationship between thermal energy flow and entropy increase, similar to Joule’s law W=RI^2. On the other hand, the coherence effect on the current-dissipation tradeoff has not been thoroughly analyzed. Here, we systematically analyze how coherence affects the current-dissipation tradeoff [3]. The results can be summarized in the following three rules:
会場: via Zoom
イベント公式言語: 英語
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セミナー
Bayesian optimization of multivariate genomic prediction models based on secondary traits for improved accuracy gains and phenotyping costs
2022年7月21日(木) 16:00 - 17:00
濱崎 甲資 (東京大学 大学院農学生命科学研究科 博士課程)
In recent years, the genomic prediction that predicts phenotypic values from marker genotype data has attracted much more attention in the area of breeding. Especially, genomic selection using prediction values based on genomic prediction models has been contributing to more efficient and rapid breeding. In genomic prediction, it is important to construct the prediction model so that its accuracy becomes higher. Thus, multivariate genomic prediction models with secondary traits, such as data from various omics technologies including high-throughput phenotyping (e.g., unmanned aerial vehicle-based remote sensing), have started to be applied to many datasets because it offers improved accuracy gains compared with genomic prediction based only on marker genotypes. Although there is a trade-off between accuracy gains and phenotyping costs of secondary traits, no attempt has been made to optimize these trade-offs. In this study, we propose a novel approach to optimize multivariate genomic prediction models with secondary traits measurable at early growth stages for improved accuracy gains and phenotyping costs. The proposed approach employs Bayesian optimization for efficient Pareto frontier estimation, representing the maximum accuracy at a given cost. The proposed approach successfully estimated the optimal secondary trait combinations across a range of costs while providing genomic predictions for only about 20% of all possible combinations. The simulation results reflecting the characteristics of each scenario of the simulated target traits showed that the obtained optimal combinations were reasonable. Analysis of real-time target trait data showed that the proposed multivariate genomic prediction model had significantly superior accuracy compared to the univariate genomic prediction model.
会場: via Zoom
イベント公式言語: 英語
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Seiberg-Witten Floer homotopy
2022年7月15日(金) 14:00 - 16:30
今野 北斗 (東京大学 大学院数理科学研究科 助教)
I will survey a mathematical object called the Seiberg-Witten Floer homotopy type introduced by Manolescu. This is a machinery that extracts interesting aspects of 3- and 4-dimensional manifolds through the Seiberg-Witten equations. This framework assigns a 3-manifold to a "space" (more precisely, the stable homotopy type of a space), and this space contains rich information that is strong enough to recover the monopole Floer homology of the 3-manifold, which is known already as a strong invariant. I shall sketch how this theory is constructed along Manolescu's original work, and introduce major applications. If time permits, I will also explain recent developments of Seiberg-Witten Floer homotopy theory. If you are not familiar with the mathematical formulation of TQFT and categorification, I recommended you to watch Dr. Sano's recent talk in advance (see related links).
会場: コモンルーム 246-248号室 とZoomのハイブリッド開催
イベント公式言語: 英語
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セミナー
Dual stochasticity of neurons and synapses for sampling-based learning in the brain
2022年7月14日(木) 16:00 - 17:00
寺前 順之介 (京都大学 大学院情報学研究科 先端数理科学専攻 非線形物理学講座 准教授)
Neurons and synapses behave highly stochastically in the brain. However, how this stochasticity is beneficial for computation and learning in the brain remains largely unknown. In this presentation, we will see that the stochastic processes in neurons and synapses can be integrated into a unified framework to optimally sample events from the environments, resulting in an efficient learning algorithm consistent with various experimental results. In particular, the learning algorithm enables us to reproduce the recently discovered efficient power-law coding in the cortex. These results suggest that synapses and neurons work cooperatively to implement a fundamental method for stochastic computing in the brain.
会場: via Zoom
イベント公式言語: 英語
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Speed limits for macroscopic transitions
2022年7月13日(水) 13:30 - 15:00
濱崎 立資 (理化学研究所 開拓研究本部 (CPR) 濱崎非平衡量子統計力学理研白眉研究チーム 理研白眉研究チームリーダー)
Speed of state transitions in macroscopic systems is a crucial concept for foundations of nonequilibrium statistical mechanics as well as various applications in quantum technology represented by optimal quantum control. While extensive studies have made efforts to obtain rigorous constraints on dynamical processes since Mandelstam and Tamm, speed limits that provide tight bounds for macroscopic transitions have remained elusive. Here, by employing the local conservation law of probability, the fundamental principle in physics, we develop a general framework for deriving qualitatively tighter speed limits for macroscopic systems than many conventional ones. We show for the first time that the speed of the expectation value of an observable defined on an arbitrary graph, which can describe general many-body systems, is bounded by the “gradient” of the observable, in contrast with conventional speed limits depending on the entire range of the observable. This framework enables us to derive novel quantum speed limits for macroscopic unitary dynamics. Unlike previous bounds, the speed limit decreases when the expectation value of the transition Hamiltonian increases; this intuitively describes a new trade-off relation between time and the quantum phase difference. Our bound is dependent on instantaneous quantum states and thus can achieve the equality condition, which is conceptually distinct from the Lieb-Robinson bound. We also find that, beyond expectation values of macroscopic observables, the speed of macroscopic quantum coherence can be bounded from above by our general approach. The newly obtained bounds are verified in transport phenomena in particle systems and nonequilibrium dynamics in many-body spin systems. We also demonstrate that our strategy can be applied for finding new speed limits for macroscopic transitions in stochastic systems, including quantum ones, where the bounds are expressed by the entropy production rate. Our work elucidates novel speed limits on the basis of local conservation law, providing fundamental limits to various types of nonequilibrium quantum macroscopic phenomena.
会場: コモンルーム 246-248号室 とZoomのハイブリッド開催
イベント公式言語: 英語
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セミナー
Adiabatic pumps in quantum spin systems
2022年7月12日(火) 16:00 - 17:15
塩崎 謙 (京都大学 基礎物理学研究所 助教)
The Thouless pump is a one-parameter cycle of 1-dimensional gapped quantum systems with U(1) symmetry, which is classified by integers. In this talk, I introduce a generalization of the Thouless pump to quantum spin systems in any dimension with any finite group onsite symmetry. I show a simple model with Z_2 onsite symmetry, and how it is nontrivial via boundary degrees of freedom. Using the framework of the injective matrix product state, one can construct the topological invariant in a way similar to the Berry phase. If time allows, I will briefly introduce a group cohomology model by Roy and Harper for generic space dimensions and discuss its properties.
会場: via Zoom
イベント公式言語: 英語
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セミナー
Stem cells determine complexity of hematopoiesis and immunity: A key in maintenance of homeostasis and fighting disease
2022年7月11日(月) 10:00 - 11:30
石川 文彦 (理化学研究所 生命医科学研究センター (IMS) ヒト疾患モデル研究チーム チームリーダー)
The hematopoietic system, is a complex organ in which all cells, including white blood cells (also known as leukocytes), red blood cells and platelets originate from the hematopoietic stem cells. White blood cells/leukocytes are critical effectors of immunity. At baseline, we have about 5000-10000/microL circulating white blood cells/leukocytes, composed of more than ten distinct subsets. Among them, the most abundant (50-60%) is the neutrophil, which are capable of preventing bacterial and fungal infection. Others include T lymphocytes which attack tumors and virus-infected cells and B lymphocytes that produce immunoglobulins. Each of the leukocyte subsets have different roles in protecting us from diseases. Defects in white blood cell number or function expose us to risks of infections and tumors. Maintenance of normal homeostasis of these white blood cells is governed by expression levels of approximately 20,000 genes in hematopoietic stem cells. In this presentation, first, I will discuss current understanding of a hierarchical system of stem cells generating many different kinds of leukocytes. Second, I will talk about leukemia, a cancer of white blood cells, in which critical genes are hit by mutations, resulting in a loss or gain of function of those genes in stem cells. Third, I would like to discuss with the iTHEMS scientists potential approaches by which we can collaborate to understand the normal and diseased human blood/immune systems.
会場: コモンルーム 246-248号室 とZoomのハイブリッド開催
イベント公式言語: 英語
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セミナー
Virus vs. Bacteria: Art of the war in the microbial world
2022年7月7日(木) 16:00 - 17:00
御手洗 菜美子 (Associate Professor, Niels Bohr Institute, University of Copenhagen, Denmark)
A virulent phage (virus that infects bacteria) infection to a host bacterial cell results in lysis of the cell, where possibly hundreds of phage particles are released after a latency time. The phage pressure is believed to be an important factor to shape the microbial communities and a driving force of their evolution, and yet we are far from having a full picture of their warfare. In this talk, I highlight a few factors that play significant roles in phage-bacteria interactions and their coexistence, such as the effect of herd immunity and the importance of the spatial structure in a few cells scale to the colony scale. *Her talk will be accessible to physicists, mathematicians, and also biologists.
会場: via Zoom
イベント公式言語: 英語
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セミナー
Gradient flow exact renormalization group 2
2022年7月6日(水) 13:30 - 17:00
鈴木 博 (九州大学 大学院理学研究院 教授)
Wilson’s exact renormalization group (ERG), which tells how a system changes under the scale transformation, provides a fundamental framework to define quantum field theory even beyond the perturbation theory. It has however been known that it is difficult to preserve a manifest gauge symmetry in ERG because of the usage of the momentum cutoff in ERG. Here, we propose a possible modification of ERG, the gradient flow exact renormalization (GFERG), which preserves a manifest gauge symmetry being based on a gauge-covariant diffusion equation. I explain the basic idea and properties of GFERG. If time permits, I want to present a possible application of GFERG to the consideration of the axial anomaly.
会場: via Zoom
イベント公式言語: 英語
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セミナー
Gradient flow exact renormalization group 1
2022年7月5日(火) 13:30 - 17:00
鈴木 博 (九州大学 大学院理学研究院 教授)
Wilson’s exact renormalization group (ERG), which tells how a system changes under the scale transformation, provides a fundamental framework to define quantum field theory even beyond the perturbation theory. It has however been known that it is difficult to preserve a manifest gauge symmetry in ERG because of the usage of the momentum cutoff in ERG. Here, we propose a possible modification of ERG, the gradient flow exact renormalization (GFERG), which preserves a manifest gauge symmetry being based on a gauge-covariant diffusion equation. I explain the basic idea and properties of GFERG. If time permits, I want to present a possible application of GFERG to the consideration of the axial anomaly.
会場: via Zoom
イベント公式言語: 英語
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セミナー
Long-term evolution of a supernova remnant hosting a double neutron star binary
2022年7月1日(金) 14:00 - 15:00
松岡 知紀 (京都大学 大学院理学研究科 博士課程)
Stellar mass loss is one of the crucial elements which determine the fate of progenitors of core-collapse supernovae (SNe). Since the material released from the progenitor will be distributed as circumstellar medium (CSM), it can also have an influence on the subsequent evolution of the SN or supernova remnant (SNR). Despite its importance, mass loss histories predicted by stellar evolution models have not been incorporated with modeling for SNRs. As a first step, we investigate the dynamical evolution of an ultra-stripped supernova remnant (USSNR), originated from a type of core-collapse SN explosion proposed to be a candidate formation site of a double neutron star binary. By accounting for the mass-loss history of the progenitor binary using a model developed by a previous study, we construct the large-scale structure of the CSM up to a radius ∼100 pc, and simulate the explosion and subsequent evolution of a USSN surrounded by such a CSM environment. We find that the CSM encompasses an extended region characterized by a hot plasma with a temperature ∼10^8 K located around the termination shock of the wind from the progenitor binary (∼10 pc), and the USSNR blast wave is drastically weakened while penetrating through this hot plasma. Radio continuum emission from a young USSNR is sufficiently bright to be detectable if it inhabits our galaxy but faint compared to the observed Galactic SNRs. In this seminar I will talk about the background of the connection between the models for stellar evolution and SNRs, the details of our methods, and future prospects.
会場: via Zoom
イベント公式言語: 英語
605 イベント
イベント
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