Ecology and Evolution of Mammal-Microbe Interactions

2025年5月29日(木) 16:00 - 17:00

鈴木 太一 (Assistant Professor, Biodesign Center for Health Through Microbiomes, Arizona State University, USA)

A critical open question in microbiome research is identifying key host-microbial interactions that influence host fitness. While the disruption of coevolved host-microbial interactions is known to affect host fitness in simpler systems (e.g., insects and their symbionts), understanding the extent and consequences of host-microbial coevolution in more complex systems (e.g., mammals and their gut microbiota) remains a major challenge. My research has identified multiple species of gut microbes in adults and children that share a parallel evolutionary history with humans by analyzing paired human genotypes and bacterial strain genotypes. In another line of work, I applied a selection experiment demonstrating that selection and transmission of the microbiome and its metabolites can alter mouse locomotion behavior within four rounds of microbiome transfer, without any changes to the mouse genome. Finally, I will briefly outline my future plans to study the effects of disrupting evolutionary stable host-microbial associations on the phenotypes of deer mice (Peromyscus spp.) in the Madrean Sky Islands and genetically diverse human populations in Arizona. Biosketch: Assistant Professor at Arizona State University since 2023. MS at University of Arizona, PhD at University of California Berkeley, and Postdoc at Max Planck Institute for Biology. My group integrates evolutionary genomics, microbial ecology, and biomedical research to study host-microbial interactions using wild rodents and humans.

会場: セミナー室 (359号室) 3階 359号室とZoomのハイブリッド開催 (メイン会場) / via Zoom

イベント公式言語: 英語

Non-perturbative formulation of resonant quantum mechanics within unified exact WKB framework

2025年5月28日(水) 16:00 - 17:30

森川 億人 (理化学研究所 数理創造研究センター (iTHEMS) 数理基礎部門 基礎科学特別研究員)

We study quasi-stationary states in quantum mechanics using the exact WKB analysis as a non-perturbative framework. We explore unstable states such as resonances by analyzing the inverted Rosen-Morse potential, which exhibits barrier resonance. This model allows exact solutions, enabling a direct comparison with exact WKB predictions. We provide a simple analytic picture of resonance and demonstrate consistency between exact and WKB-based results. A unified exact WKB framework is developed for exploring the equivalence and complementarity of different well-established regularizations \`a la Zel'dovich, complex scaling, and rigged Hilbert space within this framework.

会場: セミナー室 (359号室) 3階 359号室とZoomのハイブリッド開催

イベント公式言語: 英語

Generalized symmetry from Type IIB superstring theory

2025年5月27日(火) 16:00 - 17:00

川平 将志 (神戸大学 大学院理学研究科 物理学専攻 博士研究員)

Recently, generalized symmetries have enabled the systematic analysis of various quantum systems. In this talk, we focus on global generalized symmetries that appear in the low-energy effective theory of type IIB superstring theory (i.e., type IIB supergravity). Specifically, we highlight the SL(2,ℤ) gauge symmetry (self-duality) in type IIB supergravity. We see that a global ℤ₁₂ eight-form symmetry arises as the quantum symmetry of the SL(2,ℤ) gauge symmetry. And we discuss its topological operator and its relation to 7-branes. This talk is based on joint work with Hiroki Wada (Tohoku University) and Naoto Kan (Osaka University).

会場: 研究本館 3階 359号室とZoomのハイブリッド開催 (メイン会場) / via Zoom

イベント公式言語: 英語

A review of incompatibility in quantum information science (Topical Review Meeting #1)

2025年5月26日(月) 16:00 - 17:30

江守 陽規 (北海道大学 大学院情報科学院 博士課程)

As the first activity of the Quantum Foundation Study Group, we will hold a Topical Review Meeting. In quantum mechanics and quantum information science, the exploration of “quantumness” is of fundamental importance. One key concept that captures quantumness is “incompatibility”. In this meeting, I will give a review on incompatibility. If time permits, I would also like to introduce some of my recent research on this topic and engage in discussions with the participants.

会場: セミナー室 (359号室) (メイン会場) / via Zoom

イベント公式言語: 英語

Colored Links and Topological Vortex Structures

2025年5月23日(金) 16:00 - 17:45

Toni Annala (Dickson Instructor, Department of Mathematics, The University of Chicago, USA)

Topological vortices are intriguing defects that emerge in a wide range of physical systems, including Bose–Einstein condensates and liquid crystals. In this talk, I will describe how the global structure of such vortices can be captured pictorially using colored link diagrams—or more generally, colored embedded graphs. Through a variety of examples, I will illustrate how this framework can be used to classify and analyze vortex configurations. In particular, I will highlight conditions under which these structures are topologically protected, in the sense that they cannot decay into collections of disjoint loops without destroying the underlying phase of the system. These investigations naturally give rise to new topological invariants of colored links, which can be used to distinguish and classify such vortex structures.

会場: セミナー室 (359号室)

イベント公式言語: 英語

SISSI: Supernovae in a Shearing, Stratified Interstellar Medium

2025年5月23日(金) 14:00 - 15:15

Leonard Romano (Ph.D. Student, Ludwig-Maximilians-Universität München, Germany)

Supernovae (SNe) are an important driver of the multiphase structure in the Interstellar Medium (ISM) and play an important role for regulating star formation. SNe inflate large bubbles of hot gas dubbed Supernova Remnants (SNRs) that can remain hot for several 10⁵-10⁶ years, contributing substantially to the volume filling hot phase, galactic outflows and the driving of turbulence in the ISM. In this talk, I am presenting the results of zoom-in simulations of SNRs embedded in a simulated isolated Milky-Way analogue, in order to investigate how environmental effects like shear, vertical stratification and a self-consistently generated ISM can affect various properties of SNRs. I find that initially microscopic SNRs, whose dynamics are dominated by local shock physics, after a few Myr enter a mesoscopic regime, where their dynamics are increasingly dominated by galactic scale processes. Based on these findings, I make predictions about SN-driven large-scale structure, such as galactic outflows and the geometry of large superbubbles in disk galaxies.

会場: セミナー室 (359号室) 3階 359号室とZoomのハイブリッド開催

イベント公式言語: 英語

Beyond-classical simulations using a quantum annealer

2025年5月23日(金) 10:00 - 11:15

Alberto Nocera (Senior Staff Scientist, Stewart Blusson Quantum Matter Institute, The University of British Columbia, Canada)

Join us for an electrifying online zoom talk featuring Dr. Alberto Nocera, the author of the groundbreaking Science article detailing D-Wave's quantum annealer outperforming classical supercomputers in simulating complex magnetic materials. D-Wave’s quantum annealer uses quantum annealing to efficiently solve optimization problems by finding low-energy states of complex systems. Unlike IBM and Quantinuum’s gate-based quantum computers, which are universal and execute algorithms via quantum circuits, D-Wave’s system is specialized but currently more scalable and practical for certain applications. While gate-based systems are still limited by noise and error rates, D-Wave’s annealer recently demonstrated a quantum advantage in simulating magnetic materials, outperforming classical supercomputers. This highlights a key difference: D-Wave excels in specific tasks today, while IBM and Quantinuum aim for broader, long-term quantum computational capabilities. Talk Abstract: Solving the equations governing the dynamics of interacting many-particle quantum systems is one of the biggest challenges in modern science. In 1982, Richard P. Feynman envisioned that the best way to emulate the behavior of many-particle quantum systems is to use another quantum system, starting the field of quantum simulation. Rather than seeking to solve the fundamental equations of quantum mechanics using conventional or classical computers, in quantum simulation one seeks to simulate a quantum system using an "analog device" mimicking its behavior, hoping to access solutions which are not easy to compute otherwise. In this talk, using the quantum annealing simulator device developed by D-Wave as a main tool, I will show that the use of tensor network methods has a key role in quantum simulation: besides benchmarking the quantum device, they can assess and help establishing its functionality beyond the classically simulatable regime [1].

会場: via Zoom

イベント公式言語: 英語

Moss sporophytes and their consumers: an overlooked interaction

2025年5月22日(木) 13:00 - 14:00

今田 弓女 (京都大学 大学院理学研究科 生物科学専攻 助教)

The evolution of plant-feeding in animals is deeply intertwined with the unintentional transport of diaspores. Zoochory (the dispersal of plant diaspores by animals) has been extensively studied in flowering plants, particularly with regard to seeds and fruits. Bryophytes, in contrast, have poorly been investigated, despite possessing traits favorable for animal-mediated dispersal: they are small, easily transported, and exhibit high totipotent capacity. It has long been believed that bryophytes are rarely consumed by animals. However, our field survey into sporophyte-feeding across diverse forest-dwelling mosses (the largest clade of bryophytes) revealed the ubiquity of spore consumption. This finding prompts a re-evaluation of the ecological function of the sporophyte in the alternation of generations in mosses. Moreover, our data suggest that this interaction may be framed within the mutualism–antagonism continuum. Finally, I aim to clarify key questions surrounding the reproduction and dispersal of spore-producing plants, particularly bryophytes.

会場: via Zoom (メイン会場) / セミナー室 (359号室)

イベント公式言語: 英語

Universality class for driven interfaces and... integrable spin hydrodynamics?

2025年5月19日(月) 15:00 - 17:00

竹内 一将 (東京大学 大学院理学系研究科 准教授)

The Kardar-Parisi-Zhang (KPZ) universality class, originally formulated to describe driven systems such as growing interfaces, has undergone several paradigm shifts [1]. One major breakthrough was the discovery of exact solutions for one-dimensional models within the KPZ class — remarkable given their non-equilibrium and non-linear nature — enabled by underlying integrability. These exact results revealed nontrivial fluctuation properties, some closely linked to random matrix theory, which were subsequently observed in real experiments on driven interfaces. But more recently, the KPZ framework appears to be entering a new phase, extending unexpectedly to integrable spin chains at thermal equilibrium [2,3]. Although this connection was nearly dismissed when clear discrepancy in full counting statistics was reported, the speaker and collaborators numerically found that various two-point quantities agree precisely with KPZ exact solutions, so the KPZ class indeed governs integrable spin chains, yet only their two-point quantities [4]. I will also discuss a recent hydrodynamic theory aiming to bridge spin chains and KPZ, which, currently, falls short of fully explaining the numerical observations and calls for further refinement [2,3].

会場: セミナー室 (359号室) 3階 359号室とZoomのハイブリッド開催

イベント公式言語: 英語

Stable homotopy theory of invertible quantum spin systems

2025年5月16日(金) 16:00 - 18:00

窪田 陽介 (京都大学 大学院理学研究科 准教授)

In the past decade, A. Kitaev proposed that the set of invertible gapped quantum spin systems would form an \Omega-spectrum. This conjecture is considered to have potentially significant application to the study of SPT phases. Recently, we give a mathematically rigorous realization of this proposal with the language of functional analysis and operator algebra. This gives a unified proof of a series of existing researches. The proof also suggests to understand Kitaev's proposal from the viewpoint of coarse geometry of metric spaces. This association leads us to the concept of localization flow.

会場: セミナー室 (359号室) (メイン会場) / via Zoom

イベント公式言語: 英語

Topology and Brain Science

2025年5月16日(金) 14:00 - 15:30

Shiu Gary (Professor, Department of Physics, University of Wisconsin-Madison, USA)

会場: via Zoom

イベント公式言語: 英語

Mini-Workshop on Neuro Science

2025年5月16日(金) 9:00 - 12:00

磯 暁 (理化学研究所 数理創造研究センター (iTHEMS) センター長)
磯村 拓哉 (理化学研究所 脳神経科学研究センター (CBS) 脳型知能理論研究ユニット ユニットリーダー)
豊泉 太郎 (理化学研究所 脳神経科学研究センター (CBS) 数理脳科学研究チーム チームディレクター)
岡ノ谷 一夫 (帝京大学 先端総合研究機構 教授)
入來 篤史 (帝京大学 先端総合研究機構 特任教授)
Gary Shiu (Professor, Department of Physics, University of Wisconsin-Madison, USA)

[Program] 9:00am – 9:05am Satoshi Iso (iTHEMS RIKEN) “Opening Remarks” 9:05am – 9:35am Takuya Isomura (CBS RIKEN) “Triple equivalence integrates neural network dynamics, statistical inference, and computation” 9:45m – 10:15am Taro Toyoizumi (CBS RIKEN) “Chaotic neural dynamics facilitate probabilistic computations through sampling” 10:25am – 10:55am Kazuo Okanoya (Teikyo University) “Brain topography and auditory processing in birds and rats” 11:05am – 11:30am Atsushi Iriki (Teikyo University, iTHEMS RIKEN) “From Classical to Quantum: Rethinking Science, Consciousness, and Civilization” 11:30am – Gary Shiu (University of Wisconsin) “Summary: Mathematical Science and Brain” Followed by a seminar 2:00pm – 3:30pm Prof. Gary Shiu (University of Wisconsin) Topology and Brain Science Room 359, 3rd floor, Main Research Building, RIKEN

会場: 理化学研究所 和光キャンパス 研究本館3階 345-347 (メイン会場) / via Zoom

イベント公式言語: 英語

The index of lattice Dirac operators and K-theory

2025年5月15日(木) 13:30 - 15:00

深谷 英則 (大阪大学 大学院理学研究科 助教)

We show that the Wilson Dirac operator in lattice gauge theory can be identified as a mathematical object in K-theory and that its associated spectral flow is equal to the index. In comparison to the standard lattice Dirac operator index, our formulation does not require the Ginsparg-Wilson relation and has broader applicability to systems with boundaries and to the mod-two version of the indices in general dimensions. We numerically verify that the K and KO group formulas reproduce the known index theorems in continuum theory. We examine the Atiyah-Singer index on a flat two-dimensional torus and, for the first time, demonstrate that the Atiyah-Patodi-Singer index with nontrivial curved boundaries, as well as the mod-two versions, can be computed on a lattice (This seminar is co-organized with FQSP).

会場: セミナー室 (359号室) (メイン会場) / via Zoom

イベント公式言語: 英語

iTHEMS Biology welcomes 2 new members!

2025年5月15日(木) 13:00 - 14:15

イザク・プラナス シッジャ (理化学研究所 数理創造研究センター (iTHEMS) 数理基礎部門 特別研究員)
アントワーヌ・ディエズ (理化学研究所 数理創造研究センター (iTHEMS) 数理展開部門 数学応用研究チーム 研究員)

This meeting will be used to welcome 2 new members to the iTHEMS Biology Study Group; Postdoc Isaac Planas-Sitjà and Senior Researcher Antoine Diez. They will each give us a 15-20 min talk to introduce their research. If time permits, let's also use this time to catch up on each other's current research. I hope that many people will join us to welcome these new members and come meet them and hear about their research.

会場: 研究本館 4階 共有スペースとZoomのハイブリッド開催

イベント公式言語: 英語

2d Cardy-Rabinovici model with the modified Villain lattice formulation

2025年5月9日(金) 14:00 - 15:00

片山 颯 (京都大学 基礎物理学研究所 博士課程)

One of the most famous scenarios of the quark confinement problem is the dual superconductor picture. In this picture, the quark confinement is induced by monopole condensation, but in the theory with a θ term, we expect that not only monopole but also dyon condensation is induced, as suggested by Cardy and Rabinovici through their intuitive arguments. In this study, the Witten effect of the theory of two-dimensional compact bosons with the θ term is examined using a modified Villain-type lattice theory that can treat the θ term and dion in a rigorous manner. In addition, we construct the 2d Cardy-Rabinovici model and analyze the phase diagram through the scaling dimension argument and the anomaly matching constraint.

会場: 研究本館 3階 359号室とZoomのハイブリッド開催

イベント公式言語: 英語

The role of the visual information of fish schooling via selective decision-making

2025年5月8日(木) 16:00 - 17:00

伊藤 将 (東北大学 大学院理学研究科 物理学専攻 博士課程)

Visual cues play crucial roles in the collective motion of animals, birds, fish, and insects. Recently, experiments have revealed that organisms such as fish selectively utilize a portion, rather than the entirety, of visual information. This method of the visual interaction avoids heavy load for small brain of the organisms. However, the previous models using visual interaction implicitly assume that an agent interacts with all visible neighbors. Therefore, we study the effect of the selective decision-making on the collective motion via the agent-based model and the coarse grained continuous model. In the former study, we have constructed a visual model which takes into account the motion of visual attention of agents induced by the visual stimuli, and our model can simultaneously show the spontaneous appearance of various collective patterns and the bifurcation process of the tracking of a neighbor. The later study, the agents corresponds to the density field by the coarse graining, and the visual occlusion is treated in a self-consistent manner via a coarse-grained density field, which renders the interaction effectively pairwise. The model exhibits a discontinuous transition as in the conventional models by the local collision, and but the discontinuity is weakened by the non-locality of visual interaction. Our studies clarify the comprehensive coincidence with experimental results via selective decision-making and the essential role of non-locality in the visual interactions.

会場: via Zoom

イベント公式言語: 英語

3rd Mathematical Application Research Team Meeting

2025年5月2日(金) 13:30 - 15:00

アントワーヌ・ディエズ (理化学研究所 数理創造研究センター (iTHEMS) 数理展開部門 数学応用研究チーム 研究員)

会場: セミナー室 (359号室) 3階 359号室とZoomのハイブリッド開催

イベント公式言語: 英語

Supernova axion emissivity with Δ(1232) resonance in heavy baryon chiral perturbation theory

2025年5月1日(木) 16:00 - 17:30

Shu-Yu Ho (Postdoctoral Researcher, Institute of Physics, Academia Sinica, Taiwan)

Abstract: In this talk, we evaluate the energy loss rate of supernovae induced by the axion emission process π− + p → n + a with the Δ(1232) resonance in the heavy baryon chiral perturbation theory for the first time. Given the axion-nucleon-∆ interactions, we include the previously ignored Δ-mediated graphs to the π− + p → n + a process. In particular, the Δ_0-mediated diagram can give a resonance contribution to the supernova axion emission rate when the center-of-mass energy of the pion and proton approaches the Δ(1232) mass. With these new contributions, we find that for the typical supernova temperatures, compared with the earlier work with the axion-nucleon (and axion-pion-nucleon contact) interactions, the supernova axion emissivity can be enhanced by a factor of ∼ 4(2) in the Kim-Shifman-Vainshtein-Zakharov model and up to a factor of ∼ 5(2) in the Dine-Fischler-Srednicki-Zhitnitsky model with small tanβ values. Remarkably, we notice that the Δ(1232) resonance gives a destructive contribution to the supernova axion emission rate at high supernova temperatures, which is a nontrivial result in this study.

会場: 研究本館 3階 345−347号室 (メイン会場) / via Zoom

イベント公式言語: 英語

ComSHeL Launch Meeting

2025年5月1日(木) 14:00 - 15:00

This is the very first meeting of the new Computationally-drive Solutions for Healthier Lives (ComSHeL) Study Group. The study group brings together members from iTHEMS' Fundamental Division together with the ECL Mathematical Genomics Unit and Teams from iTHEMS Applied Math Division (Medical Science Data-driven Math Team and Medical Science Deep Learning Team). The goal of this first meeting will be to discuss and decide on the format for this monthly study group, and to get to know each other (each member introducing their research briefly). I hope you can take the time to join us.

会場: セミナー室 (359号室) 3階 359号室とZoomのハイブリッド開催

イベント公式言語: 英語