Enhancing the methodological framework for inferring selection with ancient DNA: theoretical insights, improvements and comparison

January 15 (Thu) 13:00 - 14:00, 2026

Lucas Sort (Postdoctoral Researcher, Mathematical Genomics RIKEN ECL Research Unit, Division of Fundamental Mathematical Science, RIKEN Center for Interdisciplinary Theoretical and Mathematical Sciences (iTHEMS))

Over the past decade, the emergence of ancient DNA has opened new opportunities for studying evolutionary processes. However, inferring signals of selection from such data remains a methodological challenge since controlling for population stratification, admixture, and dynamically changing demographic histories, among other confounding evolutionary processes, is difficult. In this context, ancient DNA time series data, which have proliferated, have led to the development of methods based on two main frameworks: Hidden Markov Models and Generalized Linear Mixed Models. In this work, we aim to clarify how these frameworks relate to the classical Wright–Fisher model, enabling targeted modeling improvements and producing more relevant comparisons across methods.

Venue: Seminar Room #359 (Main Venue) / via Zoom

Event Official Language: English

Classical Spinning Black Hole Scattering from Quantum Amplitudes

January 15 (Thu) 14:00 - 15:30, 2026

Dogan Akpinar (Ph.D. Student, Higgs Centre for Theoretical Physics, School of Physics and Astronomy, University of Edinburgh, UK)

Scattering amplitudes have recently become a powerful tool for extracting classical observables in two-body gravitational dynamics, with direct relevance for current and future gravitational-wave experiments. In this talk, I will review how quantum scattering amplitudes can be used to obtain classical black hole scattering observables. A key focus will be the inclusion of spin effects, modelled by treating black holes as point particles in fixed-spin representations. This approach introduces a subtle ambiguity in the separation between classical and quantum information, which we resolve using our spin interpolation method. Leveraging this, we obtain, for the first time, the classical two-loop amplitude accurate to quartic order in spin, from which we extract physical observables such as linear and angular impulses using covariant Dirac brackets. Remarkably, the resulting amplitude obeys a spin-shift symmetry, remaining invariant under a shift of the black hole spin by the momentum transfer in the scattering process. Motivated by this structure, we examine the conserved quantities governing scattering and show that—at least asymptotically—the probe dynamics remain integrable through quartic order in spin. Under this asymptotic integrability, together with the spin-shift symmetry, we demonstrate that the quartic-in-spin radial action is fully determined by the aligned-spin sector. Taken together, these results advance our understanding of spinning black hole scattering and illuminate new structural features of Kerr dynamics.

Venue: Hybrid Format (3F #359 and Zoom), Seminar Room #359

Event Official Language: English

A one-world interpretation of quantum mechanics

January 16 (Fri) 14:00 - 16:00, 2026

Isaac Layton (Postdoctoral Researcher, Department of Physics, Graduate School of Science, The University of Tokyo)

The measurement problem arises in trying to explain how the objective classical world emerges from a quantum one. In this talk I’ll advocate for an alternative approach, in which the existence of a classical system is assumed a priori. By asking that the standard rules of probability theory apply to it when it interacts with a system linearly evolving in Hilbert space, I’ll show that with a few additional assumptions one can recover the unitary dynamics, collapse and Born rule postulates from quantum theory. This gives an interpretation of quantum mechanics in which classically definite outcomes are always assigned probabilities, rather than superpositions, giving one-world instead of many. The main technical tool used is a change of measure on the space of classical paths, the functional form of which characterises the quantum dynamics and Born rules of a class of quantum-like theories. Time allowing, I will also discuss how these results clarify which additional assumptions must be accepted if one wishes to seriously consider classical alternatives to quantum gravity.

Venue: #445-447, 4F, Main Research Building / via Zoom

Event Official Language: English

Introduction to the gravitational wave background from the primordial universe

January 16 (Fri) 16:00 - 17:15, 2026

Ryo Namba (Senior Research Scientist, Division of Fundamental Mathematical Science, RIKEN Center for Interdisciplinary Theoretical and Mathematical Sciences (iTHEMS))

Being genuine propagating degrees of freedom of the spacetime metric, gravitational waves (GWs) serve as an independent "eye" through which we can probe the evolution history of our universe. They are complementary to electromagnetic observables such as cosmic microwave background (CMB) and can act as direct messengers from the earliest stage of the universe, where conventional probes lose access. In particular, a stochastic background of GWs is widely regarded as a smoking gun of cosmic inflation. In this talk, I introduce the basic theoretical framework for GWs produced in the primordial universe and discuss how they arise from vacuum fluctuations of the metric. I also outline additional production mechanisms sourced by matter fields in the early universe and contrast their characteristic observational signatures with those of vacuum tensor modes. The emphasis of my talk will be on physical intuition and analytic derivations, with the aim of making the subject accessible to non-specialists in the astrophysics community.

Venue: Hybrid Format (3F #359 and Zoom), Seminar Room #359

Event Official Language: English

Analog variational quantum eigensolver for neutral atomic quantum simulators

January 20 (Tue) 10:00 - 12:00, 2026

Kazuma Nagao (Postdoctoral Researcher, Computational Materials Science Research Team, RIKEN Center for Computational Science (R-CCS))

Venue: Seminar Room #359 (Main Venue) / via Zoom

Event Official Language: English

Evolution of sterile soldier castes in aphids

January 21 (Wed) 13:00 - 14:00, 2026

Keigo Uematsu (Assistant Professor, Keio University)

This seminar is jointly organized with the RIKEN Center for Sustainable Resource Science (CSRS). Social evolution in aphids is tightly linked to the formation of galls on their host plants. Galls provide efficient colony defense and nutritionally rich feeding sites such that colony members need not forage outside, leading to high intra-group relatedness. Typically, social aphids form a gall on their primary host plant, after which winged morphs disperse to secondary host plants and establish a free-living, open colony. Remarkably, sterile soldier castes have independently evolved twice in these open colonies, where individuals live on plant surfaces without modifying their structure. These aphids raise intriguing questions about the prerequisites for eusocial evolution and the mechanisms by which two distinct social systems are maintained within a single genome. In this talk, I will first provide an overview of the life cycle and the diversity of altruistic behaviors in gall-forming aphids, and then present our studies of the evolution of a sterile soldier caste in aphids inhabiting open colonies. From a developmental perspective, we tested the hypothesis that the sterile soldiers evolved through the co-option of pre-existing soldier phenotypes in a gall, based on similarity in morphology, transcriptome and behavior. From an ecological perspective, we investigated the kin structure and altruistic behavior of young nymphs in the open colonies of pre-eusocial species, and demonstrate that young aphids exhibit altruism by yielding feeding sites to older kin. Together, we propose that the open colonies of social aphids provide an ideal model system for studying the evolution of altruism.

Venue: Hybrid Format (3F #359 and Zoom), Seminar Room #359 (Main Venue) / via Zoom

Event Official Language: English

New computational methods in quantum field theory 2026

January 26 (Mon) - 28 (Wed) 2026

Recent developments in quantum computers and related theoretical/technical advancements have brought attention to "new computational methods in quantum field theory" in the fields of high energy/nuclear physics. Main targets of this school are graduate students and postdocs. This school provides opportunities to discuss recent research trends and their applications through lectures by experts and presentations by participants. Lecturers: Junichi Haruna (University of Osaka) "Introduction to Quantum Error Correction (tentative)" Yoshimasa Hidaka (Yukawa Institute for Theoretical Physics/RIKEN iTHEMS) “Introduction to Hamiltonian Lattice Gauge Theory (tentative)” Tokiro Numasawa (University of Tokyo) "Open Majorana system (tentative)"

Venue: #435-437, 4F, Main Research Building

Event Official Language: English

DEEP-IN-iPI Joint Meeting

January 26 (Mon) - 30 (Fri) 2026

Xingyu Guo (Lecturer, Institute of Quantum Matter, South China Normal University, China)
Gert Aarts (Professor, Department of Physics, Swansea University, UK)
Shuzhe Shi (Assistant Professor, Physics Department, Tsinghua University, Beijing, China)
Sung Hak Lim (Senior Researcher, Center for Theoretical Physics of the Universe (CTPU-PTC), Institute for Basic Science (IBS), Republic of Korea)
Jinyang Li (Ph.D. Student, Program of Particle and Nuclear Physics, The Graduate University for Advanced Studies (SOKENDAI))

The series of DEEP-IN meetings (Jan 26–30, 2026) are joint with UTokyo Institute for Physics of Intelligence (iπ), which is a multi-day scientific program bringing together researchers to explore quantum simulations, machine learning physics, and applications in particle and nuclear physics. The tentative schedule is, UTokyo-iπ Session (Venue: #512, Faculty of Science Bldg.1, School of Science, UTokyo) Day 1: Jan 26 (Mon) 14:30–16:00 Onset of Bjorken flow in a quantum many-body simulation of the massive Schwinger model, Shuzhe Shi Day 2: Jan 27 (Tue) 14:30–16:00 Physics of Diffusion Models, Gert Aarts 16:00–17:30 Discovering Symmetry from Energy-Based Diffusion Models, Jinyang Li RIKEN-iTHEMS Session (Venue: Seminar Room #359, Main Research Building) Day 3: Jan 28 (Wed) 14:30–16:00 Understanding Galactic Dark Matter with Generative Models, Sung Hak Lim 16:00–18:00 Free Discussion ML Physics-1 Day 4: Jan 29 (Thu) 10:00–11:30 Quantum Simulations of HEP and Beyond, Xingyu Guo 14:30–16:00 Physics of Machine Learning, Gert Aarts Day 5: Jan 30 (Fri) 11:00–14:00: Free Discussion ML Physics-2

Venue: via Zoom / Seminar Room #359 / Faculty of Science Bldg.1, School of Science, The University of Tokyo, Hongo Campus

Event Official Language: English

iTHEMS Cosmology Forum n°5 - Effective Field Theory approaches across the Universe

January 29 (Thu) 10:00 - 17:00, 2026

Katsuki Aoki (Research Assistant Professor, Yukawa Institute for Theoretical Physics, Kyoto University)
Toshifumi Noumi (Associate Professor, Graduate School of Arts and Sciences, The University of Tokyo)
Lucas Pinol (CNRS Researcher, LPENS, CNRS/École Normale Supérieure, France)

This fifth workshop will bring together researchers exploring the effective field theory (EFT) framework in diverse cosmological contexts. Topics will include EFT formulations of interacting dark matter and dark energy, open EFTs for gravity, and multi-field inflationary dynamics. By highlighting recent progress and open questions, the workshop seeks to bridge insights from the early and late universe through the unifying language of EFT. In addition to the invited talks, the workshop will feature a panel discussion designed to promote interaction between the speakers and participants. One of the key goals of this event is to foster collaboration among researchers working in neighboring fields, and to encourage participation from young and early-career researchers who are interested in, but may not yet have worked on, these themes. The workshop welcomes a broad audience with an interest in theoretical cosmology, gravitation, and quantum field theory. The workshops are organised by the Cosmology Study Group at RIKEN iTHEMS.

Venue: #435-437, 4F, Main Research Building

Event Official Language: English

Gauge fixing for open systems: A pathway to open gravity EFTs

January 30 (Fri) 14:00 - 16:00, 2026

Maria Mylova (Project Researcher, Kavli Institute for the Physics and Mathematics of the Universe (Kavli IPMU))

Understanding how to gauge-fix open quantum field theories is essential for building consistent open frameworks for cosmology and gravity, where gauge symmetry must coexist with dissipation and noise and decoherence. I will present our recent work developing explicit top-down constructions of open effective field theories (EFTs) for gauge degrees of freedom, with particular emphasis on the role of gauge fixing. We implement BRST quantisation on the Schwinger-Keldysh contour and show that the in-in boundary conditions reduce the doubled global BRST symmetry to a single diagonal copy. This diagonal BRST symmetry is nevertheless sufficient to guarantee that the influence functional remains gauge invariant under two independent gauge transformations, retarded and advanced, independently of the choice of initial state, the presence of symmetry-breaking phases, and whether the gauge theory is Abelian or non-Abelian. We further clarify how this is compatible with the decoupling limit, in which the global advanced symmetry is generically broken by the state. I will conclude by outlining bottom-up implications, and how these principles provide a systematic route to causal, gauge-invariant open EFTs suitable for cosmological and gravitational applications.

Venue: #445-447, 4F (Hybrid), Main Research Building

Event Official Language: English

Mathematical Application Research Team Meeting #12

February 6 (Fri) 14:00 - 15:30, 2026

Riccardo Muolo (Special Postdoctoral Researcher, Division of Fundamental Mathematical Science, RIKEN Center for Interdisciplinary Theoretical and Mathematical Sciences (iTHEMS))

Mathematical Application Research Team invites Riccardo Muolo fom Division of Fundamental Mathematical Science to this meeting. You are welcome to join the meeting. Title: Dynamics beyond nodes: a topological framework for oscillatory dynamics on higher-order networks Abstract: In recent years, increasing attention has been given to dynamical processes taking place on higher-order networks, where interactions are not limited to links, but may involve also higher-dimensional simplices [1]. While classical network models assume that state variables live on nodes and interact through links, many real systems — including brain, climate, and transportation systems — cannot be fully described within this node-centric perspective [2]. In this seminar, I will introduce the framework of higher-order networks and the concept of topological signals, namely, dynamical variables defined on simplices of higher dimensions. I will briefly present the basic tools required for this setting, including elementary notions of discrete calculus, discrete topology and geometric algebra, which serve as the mathematical foundation for modeling dynamical processes beyond the node-based paradigm. Next, I will discuss models of oscillatory dynamics extended to this framework. First, I will present the topological Kuramoto model [3], in which phases are not restricted to nodes but may also be associated with links, and where the coupling arises from the combinatorial structure of the simplicial complex. Then, I will introduce the discrete Hodge Laplacian and the Dirac-Bianconi operator [4], the former generalizing diffusive interactions to the higher-order setting, while the latter provides cross-talk between signals defined on simplices of different dimensions. Finally, I will introduce the notion of Dirac-Bianconi driven oscillators, where the dynamics of node- and link-signals coexist, interact and may give rise to collective oscillatory behaviors [5].

Venue: via Zoom

Event Official Language: English

What can we learn from kilonovae about nucleosynthesis and high-density matter?

February 9 (Mon) 14:00 - 15:15, 2026

Oliver Just (Postdoctoral Researcher, GSI Helmholtzzentrum für Schwerionenforschung, Germany)

The electromagnetic transients accompanying neutron-star mergers (NSMs), called kilonovae, are powered by the radioactive decay of freshly synthesized heavy elements. As such they should contain rich information about the ejected matter and the properties of the extremely dense meta-stable neutron-star remnant formed right after the collision. However, extracting such information from observed kilonova light curves and spectra remains a challenging endeavor, which requires sophisticated models of various hydrodynamic processes and neutrino transport effects, detailed knowledge of nuclear and atomic physics, as well as complex radiative transfer calculations. In this talk I will report recent efforts from our "HeavyMetal" collaboration aimed at deciphering kilonovae.

Venue: Hybrid Format (3F #359 and Zoom), Seminar Room #359

Event Official Language: English

The 31th MACS Colloquium & 2025 MACS Achievement Report Meeting

February 18 (Wed) 14:45 - 18:00, 2026

Yujiro Eto (Associate Professor, Center for Science Adventure and Collaborative Research Advancement (SACRA), Graduate School of Science, Kyoto University)

14:45-15:00 Teatime discussion [15:00-16:00 The 31th MACS Colloquium] Talk by Dr. Yujiro Eto (Associate Professor, Center for Science Adventure and Collaborative Research Advancement (SACRA), Graduate School of Science, Kyoto University) [16:10-18:30 2025 MACS Achievement Report Meeting] 16:10-17:10 Flash Talks to report results 17:10-18:00 Poster Session by SG participating students

Venue: Science Seminar House (Map 9), Kyoto University

Event Official Language: Japanese

The sample complexity of species tree estimation: How many genes does it take to infer a species tree?

February 19 (Thu) 13:00 - 14:00, 2026

Max Hill (Assistant Professor, University of Hawaiʻi, USA)

In this talk, I will discuss the problem of inferring an evolutionary tree from DNA sequence data. The main focus will be on the sample complexity of this problem---i.e., the question of how much data is required to achieve high probability of correct inference. After introducing a standard stochastic model of gene and DNA evolution, I will highlight some surprising features of DNA sequence data that complicate inference. Finally, I will present an impossibility result which takes the form of an information-theoretic lower bound on the minimum amount of data needed for accurate inference when genes exhibit variation in mutation rates. No prior knowledge of phylogenetics or information theory is assumed. Based on joint work with Sebastien Roch.

Venue: Seminar Room #359 (Main Venue) / via Zoom

Event Official Language: English

Lie Algebraic Saddles of the IKKT Matrix Model

February 24 (Tue) 14:00 - 16:00, 2026

Henry Liao (Ph.D. Student, Department of Physics, National Taiwan University, Taiwan)

This semi-informal seminar will feature about one hour of prepared presentation, with ample time reserved for questions and discussion. Abstract: The IKKT matrix model as a promising non-perturbative formulation of type IIB superstring theory has been studied extensively over the past few decades both numerically and analytically. However, due to the nonlinear nature of its equations of motion, the saddle structure of the IKKT matrix model remains underexplored. In this talk, we consider the matrix degrees of freedom to be representations of finite dimensional Lie algebra, and discuss how to construct saddles accordingly. As a physical example, we apply dequantization map to discuss how curved spacetime can emerge from these saddles.

Venue: #359, 3F, Main Research Building (Main Venue) / via Zoom

Event Official Language: English

Testing the quantum nature of gravity with optomechanical systems

February 26 (Thu) 10:00 - 12:00, 2026

Yuta Michimura (Assistant Professor, Department of Physics, Graduate School of Science, The University of Tokyo)

Quantum gravity remains one of the major challenges in modern physics. Even at the most fundamental level, there is no experimental confirmation of whether a mass placed in a spatial superposition generates a corresponding superposition of gravitational fields. In recent years, experiments aiming to create gravity-induced quantum entanglement have attracted significant attention as a way to probe the quantum nature of non-relativistic gravity. In particular, optomechanical systems, which exploit the interaction between light and mechanical oscillators, provide a promising platform for such studies. We are pursuing experiments at the milligram scale, which lies between the smallest mass scale at which classical gravity has been tested and the largest mass scale at which quantum states of mechanical oscillators have been realized [1]. In this seminar, I will discuss experimental approaches to testing the quantum nature of gravity using suspended and levitated mirrors. I will also discuss our recent proposal to use inverted oscillators to enhance gravity-induced entanglement exponentially [2].

Venue: Hybrid Format (3F #359 and Zoom), Seminar Room #359

Event Official Language: English

The career talk: From Quarks to Cinematic Sparks

February 27 (Fri) 15:00 - 16:30, 2026

Agnes Mocsy (Professor, Department of Mathematics and Science, Pratt Institute, USA)

While my career began in a linear way, it gradually opened into a non-traditional path through unexpected mergings, where theoretical nuclear physics, filmmaking, and creative public and academic engagement intertwined. I will share how scientific inquiry, artistic practice, and storytelling began shaping one another, opening new ways to explore complexity, emotion, and connection. Drawing on work from my physics research to cinema projects like Rare Connections, I will reflect on how curiosity and creative thinking move freely across science and art, deepening each and expanding how we understand the human experience. My aim is to offer a perspective on the possibilities that emerge when we allow our multitudes to meet and transform one another.

Venue: Hybrid Format (3F #359 and Zoom), Seminar Room #359

Event Official Language: English

RIKEN iTHEMS-Kyoto University joint workshop on Asymptotics in Astrophysics and Cosmology

March 2 (Mon) - 4 (Wed) 2026

This joint workshop will bring together physicists and mathematicians who work with asymptotics and perturbation theory techniques. This includes theorists in cosmology, high energy physics, quantum gravity, solar physics, astrophysics. Workshop overview Over three days, there will be approximately 15 invited (1 hour slot) or contributed (20-30 min slot) talks about: Fundamental asymptotics and perturbation theory techniques used in theoretical physics. Various applications of asymptotics and perturbation theory techniques in (wave transport or oscillation related) astrophysics and cosmology eigenvalue problems. The workshop will also feature hands-on Mathematica and Python tutorials introducing: Practical use of WKB methods in applied mathematics for any “Schrodinger-like” wave equations, Resummation methods in high energy theory, Deriving normal modes in stars, and their application to tidal evolution in binary star or planet systems, Eigenvalue problems in core collapse supernova theory.

Venue: 8F, Integrated Innovation Building (IIB)

Event Official Language: English

KEK-iTHEMS Workshop “Concepts of Quantum and Spacetime”

March 9 (Mon) - 12 (Thu) 2026

The two fundamental questions—“What is quantum?” and “What is spacetime?”—are deeply intertwined. On one hand, the formulation and interpretation of quantum theory depend both implicitly and explicitly on our conceptions of time and space. On the other hand, we believe that fully taking into account the quantum character of nature will force us to revise our understanding of spacetime. These two conceptual problems lie at the heart of the unsolved challenge of how to quantize classical spacetime, and conversely, how (semi-) classical descriptions of spacetime emerge from quantum theory. Furthermore, if the entire matter-spacetime system is a kind of quantum many-body system, thermodynamics—which governs its statistical behaviors—should play a key role in elucidating these problems. This workshop will discuss the question “How can quantum theory and spacetime be understood in a consistent manner?” from a fundamental and broad perspective. To tackle this challenge, we gather researchers in foundations of quantum theory, quantum gravity, and related fields from around the world, providing a "space and time" to share various ideas with open minds and engage in lively discussions. By exploring new concepts and principles, we hope to uncover directions to guide quantum theory over the next 100 years. This workshop covers… Foundations of quantum theory Quantum gravity and emergence of spacetime Formulation of semi-classical gravity Experimental aspects of fundamental properties in nature and quantum gravity Foundations of quantum many-body systems and thermodynamics Other related topics are welcome. We welcome short talk presentations and poster presentations. This event is a workshop jointly organized by KEK Theory Center and RIKEN iTHEMS.

Venue: Seminar Hall, Building 3, KEK

Event Official Language: English

Perspectives and applications of Koopman Operator Theory

March 19 (Thu) 9:00 - 18:00, 2026

Yoshihiko Susuki (Professor, Graduate School of Engineering, Kyoto University)
Hiroya Nakao (Professor, Department of Systems and Control Engineering, Institute of Science Tokyo)
Alexandre Mauroy (Associate Professor, Mathematics, University of Namur, Belgium)
Yuzuru Kato (Associate Professor, Department of Complex and Intelligent Systems, School of Systems Information Science, Future University-Hakodate)

Venue: Room 535-537, 5F, Main Research Building

Event Official Language: English

Clumpy Outflows from Super-Eddington Accreting Black Holes

April 10 (Fri) 14:00 - 15:15, 2026

Haojie Hu (JSPS Research Fellow, University of Tsukuba)

Recent advances in X-ray spectroscopic observation have enabled researchers to reveal distinct clumpy structures in the super-Eddington outflows from the supermassive black hole in PDS 456 (XRISM Collaboration 2025), initiating detailed investigation of fine-scale structures in accretion-driven outflows. In this talk, I will introduce our high-resolution, two-dimensional radiation-hydrodynamics simulations with time-varying and anisotropic initial and boundary conditions that reproduce clumpy outflows from super-Eddington accretion flows. The resulting clumpy outflows extend across a wide range of radial distances and polar angles, exhibiting typical properties such as a size of ~10 rg (where rg is the gravitational radius), a velocity of ~0.05–0.2 c (where c is the speed of light), and about five clumps along the line of sight. Although the velocities are slightly smaller, these characteristics reasonably resemble those obtained from the XRISM observation. The gas density of the clumps is on the order of 10^-13–10^-12 g cm^-3, and their optical depth for electron scattering is approximately 1–10. The clumpy winds accelerated by radiation force are considered to originate from the region within <300 rg.

Venue: #220, 2F, Main Research Building (Main Venue) / via Zoom

Event Official Language: English