Seminar
772 events
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Seminar
The rheotaxis mechanism of swimming ciliates
April 22 (Thu) at 10:00 - 11:00, 2021
Yukinori Nishigami (Research Institute for Electronic Science, Hokkaido University)
The swimming unicellular organisms, which live in freshwater, need to resist currents in the environment. Without this ability, their habitat changes with the flow, and they cannot survive in nature for a long time. It is reported that a kind of swimming microorganism, Paramecium, exhibits upstream swimming in 1904. However, the mechanism of the behavior has been still unclear. To elucidate the mechanism, we observed the behavior of a ciliate in a flow field and performed numerical fluid calculations. My results suggest that the rheotaxis is realized by cell shape and inhibition of ciliary beating near the wall. *Please refer to the email to get access to the Zoom meeting room.
Venue: via Zoom
Event Official Language: English
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Seminar
Unconventional Spin Transport in Quantum Materials
April 21 (Wed) at 17:00 - 18:15, 2021
Se Kwon Kim (Korea Advanced Institute of Science and Technology (KAIST), Republic of Korea)
Recent advancements in spintronic techniques originally developed for spin-based devices now enable us to study fundamental spin physics of various quantum materials with unprecedented spin-current control and measurement, opening a new area of theoretical and experimental investigation of quantum systems. In this talk, we will introduce this emerging research area of spin transport in quantum materials which is fueled by the global interest in quantum information science. As examples, we will discuss our discovery of magnonic topological insulators realized by 2D magnets [1-3], which shows how spintronic techniques can be used for probing elusive quantum materials, and our prediction of long-range spin transport mediated by a vortex liquid in superconductors [4], which shows that quantum materials can provide novel platforms for efficient spin-transport devices. We will conclude the talk by offering a future outlook on quantum spintronics. *Detailed information about the seminar refer to the email.
Venue: via Zoom
Event Official Language: English
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Seminar
Liquid condensates in cell nucleus
April 15 (Thu) at 10:00 - 11:00, 2021
Kyosuke Adachi (Special Postdoctoral Researcher, RIKEN Interdisciplinary Theoretical and Mathematical Sciences Program (iTHEMS) / Special Postdoctoral Researcher, Nonequilibrium Physics of Living Matter RIKEN Hakubi Research Team, RIKEN Center for Biosystems Dynamics Research (BDR))
I will give a talk in a journal club style. I will introduce recent papers regarding liquid-liquid phase separation in cells. In cell biology, several types of liquid condensates of proteins/RNAs have been found recently. The functions of such condensates and the physical mechanism of controlling the liquid state are intensely discussed. In this talk, I will focus on liquid condensates in the cell nucleus and review recent experimental results. *Please refer to the email to get access to the Zoom meeting room.
Venue: via Zoom
Event Official Language: English
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Seminar
What "Holography" is and how to use it
April 14 (Wed) at 17:00 - 18:15, 2021
Mario Flory (Instituto de Fisica Teorica, Universidad Autonoma de Madrid, Spain)
In this talk, I will give an introduction to the holographic principle and the Anti-de Sitter/Conformal Field Theory (AdS/CFT) correspondence. I will also discuss the role that quantum entanglement plays in this correspondence via the Ryu-Takayanagi formula which maps the calculation of entanglement entropy to a geometric problem of extremal surfaces. Then, I will present a holographic model of a Kondo like effect as an example of how the AdS/CFT correspondence can be employed in practice. *Detailed information about the seminar refer to the email.
Venue: via Zoom
Event Official Language: English
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Seminar
Journal Club: Trace inequalities and their applications
April 14 (Wed) at 14:30 - 15:30, 2021
Yukimi Goto (Special Postdoctoral Researcher, RIKEN Interdisciplinary Theoretical and Mathematical Sciences Program (iTHEMS))
In this talk, I will explain trace inequalities and related topics. Mainly, I focus on results concerning quantum entropy. This talk is an elementary introduction to that subjects. *Detailed information about the seminar refer to the email.
Venue: via Zoom
Event Official Language: English
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Seminar
Self-adjoint extension in quantum mechanics and non-Rydberg spectra of one-dimensional hydrogen atom
April 13 (Tue) at 16:00 - 18:10, 2021
Takuju Zen (Professor, School of Environmental Science and Engineering, Kochi University of Technology)
We offer a beginner’s guide to the functional-analytical techniques in quantum mechanics, and cover its application to the 1D Coulomb problem. It is shown that the wave function at the diverging point of the Coulomb potential is mathematically described by three-parameter family of generalized connection conditions. A scheme is devised to physically implement the generalized conditions, which provides the way to experimentally realize non-Rydberg spectra in 1D Hydrogen atom. Schedule: Part 1, Self-adjoint extension of Hilbert space operator Part 2, 1D Coulomb problem
Venue: via Zoom
Event Official Language: English
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Seminar
Simple models of cancer growth, MCMC parameter estimation and identifiability
April 8 (Thu) at 10:00 - 11:00, 2021
Catherine Beauchemin (Deputy Program Director, RIKEN Interdisciplinary Theoretical and Mathematical Sciences Program (iTHEMS) / Professor, Department of Physics, Ryerson University, Canada)
I would like to introduce some basic concepts about (very simple) mathematical model of cancer growth, the basic math behind parameter estimation via Markov chain Monte Carlo (MCMC) based on Bayes' theorem, and the different diagnostics you can use to know if the parameters are correctly estimated. I will use a recent example with cancer data in mice. I think this seminar can be interesting to mathematicians (because of the models and the math behind the parameter estimation, but the math is very basic!), to physicists (especially those that have to do some parameter estimation), and to biologists (the cancer model/data and the parameter estimation). I think it will also be interesting to the information theory and prediction science people. MCMC parameter estimation based on physical models is more valuable in my field than machine learning, so I think those interested in machine learning but maybe are not so familiar with MCMC should join to consider them as an alternative approach in certain contexts. *Please refer to the email to get access to the Zoom meeting room.
Venue: via Zoom
Event Official Language: English
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Seminar
Long-time behavior of moving solids in a fluid and the kinetic theory of gases
April 7 (Wed) at 16:00 - 18:10, 2021
Kai Koike (JSPS Fellow, Graduate School of Engineering, Kyoto University)
Understanding dynamics of solids in a fluid is a fundamental problem in fluid dynamics. Due to the growing interest in engineering in out-of-equilibrium situations, moving boundary problems for kinetic equations such as the Boltzmann equation have become an active area of research. In the first part of the talk, I shall explain recent, especially mathematical, developments in this field. Then in the second part, I'd like to explain my results concerning the long-time behavior of a point particle moving in a 1D viscous compressible fluid. These results aim to give some explanation of related numerical simulations for a BGK model of the Boltzmann equation.
Venue: via Zoom
Event Official Language: English
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Seminar
Structural reduction of chemical reaction networks based on topology
April 1 (Thu) at 10:00 - 11:00, 2021
Yuji Hirono (Junior Research Group Leader/Assistant Professor, Research Division, Asia Pacific Center for Theoretical Physics, Republic of Korea)
Chemical reactions form a complex network in living cells and they play vital roles for physiological functions. An amusing question is how the structure of a reaction network is linked to its chemical functionalities. I’ll talk about a method of the reduction of chemical reaction networks, which is convenient for extracting important substructures. Mathematical concepts such as homology and cohomology groups are found to be useful for characterizing the shapes of reaction networks and for tracking the changes of them under reductions. For a given chemical reaction network, we identify topological conditions on its subnetwork, reduction of which preserves the steady state of the remaining part of the network.
Venue: via Zoom
Event Official Language: English
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Seminar
Evolutionary conservativeness and diversification of cycads: Understanding the evolution of living fossils
March 25 (Thu) at 10:00 - 11:00, 2021
José Said Gutiérrez-Ortega (Assistant Professor, Institute for Excellence in Educational Innovation, Chiba University)
The cycads are a lineage of gymnosperms that represent an example of biological stasis success. Despite their early origin in the seed plant evolution, they survived multiple events of mass extinction and could diversify in modern tropical ecosystems during the Cenozoic, especially in countries known for their great biodiversity such as Mexico. What factors have allowed their persistence and diversification despite their conservative nature? I have studied the cycad genus Dioon, a group of 17 species occurring in habitats ranging from tropical forests to arid zones in Mexico and Honduras. Phylogenetic and phylogeographic analyses revealed that the diversification of Dioon has been driven by the long-term process of aridification of Mexico since the Miocene. The lineages that shifted from mesic forests to arid zones show leaf trait variations beneficial against water stress; this feature can be also observed at the inter-population level when comparing mesic versus arid sister pairs. What mechanism allows this aridification-driven diversification? Using population genetics and ecological niche modeling on sister lineage pairs, I have revealed that lineages at arid zones might tolerate arid environments, but within the arid habitat, they retain the same ancestral niche also observed on their mesic sisters. The surrounding areas that are suboptimal for their niches serve as barriers against gene flow: this promotes allopatric speciation. This research has revealed that the mechanism that allows the diversification process in Dioon involves three factors: 1) a habitat shift due to aridification, 2) niche conservatism that facilitates geographic isolation, 3) gaining unique morphological and anatomical features that help to counteract water stress, probably through long-term stabilizing selection. This research highlights the importance of biological conservatism in evolution, and how “living fossils” can still diversify into modern ecosystems.
Venue: via Zoom
Event Official Language: English
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Seminar
Journal Club: Reinforcement Learning
March 24 (Wed) at 13:00 - 14:00, 2021
Akinori Tanaka (Senior Research Scientist, RIKEN Interdisciplinary Theoretical and Mathematical Sciences Program (iTHEMS))
Reinforcement Learning (RL) is a scheme of Machine Learning that is applicable "without training data." Instead, we prepare a "world" that agents (learners) can probe, and try to optimize their behavior. Historically, study of RL has deep connection to studies of psychology and neuroscience. In this journal club, I would like to give a lightning review of RL. *Detailed information about the seminar refer to the email.
Venue: via Zoom
Event Official Language: English
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Seminar
The Green-Tao theorem for number fields
March 22 (Mon) at 16:00 - 18:10, 2021
Wataru Kai (Assistant Professor, Mathematical Institute, Tohoku University)
5, 11, 17, 23, 29 are prime numbers which form an arithmetic progression of length 5. A famous theorem of Ben Green and Terence Tao in 2008 says there are arbitrarily long arithmetic progressions of prime numbers. Algebraic number theorists are also interested in more general numbers like square roots of integers. Recently, Mimura, Munemasa, Seki, Yoshino and I have established a generalization of the Green-Tao theorem in such a direction. In the first 50 minutes of my talk, I would like to explain some background and technology behind the Green-Tao theorem. In the second half after a break, I explain the concept of number fields to formulate our generalization of their result. I will also discuss how one of the new difficulties, which I call the norm vs length conflict, is handled by a technique called Geometry of Numbers. *Please contact Keita Mikami or Hiroyasu Miyazaki's mailing address to get access to the Zoom meeting room.
Venue: via Zoom
Event Official Language: English
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Seminar
Geometric nonlinear optical effects
March 16 (Tue) at 17:00 - 18:15, 2021
Takahiro Morimoto (Associate Professor, Department of Applied Physics, Graduate School of Engineering, The University of Tokyo)
Time: 5pm ~ 6:15pm (JST); 9am ~ 10:15am (CET) The responses of materials to high intensity light, i.e., nonlinear optical responses, constitute a vast field of physics and engineering. While geometry and topology has been playing a central role in recent studies of condensed matters, geometrical aspects of nonlinear optical effects have not been fully explored so far. In this talk, I will show a few examples of nonlinear optical effects that have geometrical origins. First, I present that the second-order nonlinear optical effects including the shift-current, a candidate mechanism for recently discovered solar cell action in perovskite materials, has a close relationship to the modern theory of polarization, and is described by the Berry connection of Bloch wave function [1]. I will also discuss how electron correlations can enhance/modify shift current response in inversion broken materials. Next, I show that another second-order nonlinear effect, circular photogalvanic effect (CPGE), is governed by Berry curvature and shows quantization in Weyl semimetals [2]. I will report a recent measurement on chiral multifold fermion RhSi that observed a plateau structure in CPGE which is consistent with the expected quantization [3].
Venue: via Zoom
Event Official Language: English
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Seminar
Microeconomics of metabolism
March 10 (Wed) at 10:00 - 11:00, 2021
Jumpei Yamagishi (Ph.D. Student, Kaneko Laboratory, The University of Tokyo)
Metabolic behaviors of proliferating cells are often explained as a rational choice to optimize cellular growth rate. In contrast, microeconomics formulates consumption behaviors as optimization problems of utilities. We pushed beyond this analogy to precisely map metabolism onto the theory of consumer choice. We thereby revealed the correspondence between and a general mechanism for mysteries in biology and economics: the Warburg effect, a seemingly-wasteful but ubiquitous phenomenon where cells favor aerobic glycolysis over more energetically-efficient respiration, and Giffen behavior, the unexpected consumer behavior where a good is demanded more as its price rises. The correspondence implies that respiration is counterintuitively stimulated when its efficiency is decreased by drug administration. This “microeconomics of metabolism” will serve as a macroscopic phenomenology to predict the metabolic responses against environmental operations. In particular, it offers a universal relationship between the metabolic responses against drug administrations and changes in nutrient availability.
Venue: via Zoom
Event Official Language: English
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Seminar
Exceptional Topology of Non-Hermitian Systems: from Theoretical Foundations to Novel Quantum Sensors
March 3 (Wed) at 17:00 - 18:15, 2021
Jan Budich (Professor, Quantum Many-Body Physics, TU Dresden, Germany)
CET: 9:00a.m. - 10:15a.m. on March 3, 2021 JST: 5:00p.m. - 6:15p.m. on March 3, 2021 EST: 3:00a.m. - 4:15a.m. on March 3, 2021 In a broad variety of physical scenarios ranging from classical meta-materials to open quantum systems, non-Hermitian (NH) Hamiltonians have proven to be a powerful and conceptually simple tool for effectively describing dissipation. Motivated by recent experimental discoveries, investigating the topological properties of such NH systems has become a major focus of current research. In this talk, I give an introduction to this rapidly growing field, and present our latest results. Specifically, we discuss the occurrence of novel gapless topological phases unique to NH systems. There, the role of spectral degeneracies familiar from Hermitian systems such as Weyl semimetals is played by exceptional points at which the effective NH Hamiltonian becomes non-diagonalizable. Furthermore, we show how guiding principles of topological matter such as the bulk boundary correspondence are qualitatively changed in the NH realm. Finally, we demonstrate that the sensitivity of NH systems to small changes in the boundary conditions may be harnessed to devise novel high-precision sensors. *Detailed information about the seminar refer to the email.
Venue: via Zoom
Event Official Language: English
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Seminar
Origin of non-linearity of large deformation on DNA stretched
February 25 (Thu) at 10:00 - 11:00, 2021
Hiroshi Yokota (Postdoctoral Researcher, RIKEN Interdisciplinary Theoretical and Mathematical Sciences Program (iTHEMS))
Since DNA in a cell is mechanically stretched or rotated by many proteins, the mechanical response of DNA in vitro is expected to be basic point for understanding its behavior. When DNA is stretched by relatively high force, the length of DNA shows the nonlinear response. In this talk, I introduce the theoretical treatment of DNA stretching in high force region based on polymer physics.
Venue: via Zoom
Event Official Language: English
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Seminar
The Evolution of Primordial Neutrino Helicities under Gravitational and Magnetic Fields and Implications for their Detection
February 22 (Mon) at 10:00 - 11:30, 2021
Gordon Baym (Senior Visiting Scientist, RIKEN Interdisciplinary Theoretical and Mathematical Sciences Program (iTHEMS) / Professor Emeritus, University of Illinois, USA)
Feb.22 (Mon) 10:00am-11:30am (JST) Primordial neutrinos decoupled in the early universe in helicity eigenstates. As I will discuss, two effects -- dependent on neutrinos having a non-zero mass -- can modify their helicities as they propagate through the cosmos. First, finite mass neutrinos have a magnetic moment and thus their spins, but not their momenta, precess in cosmic and galactic magnetic fields. The second is the propagation of neutrinos past cosmic matter density fluctuations, which bend their momenta, and bend their spins by a smaller amount. (The latter is a general relativistic effect.) Both effects turn a fraction of left-handed neutrinos into right-handed neutrinos, and right-handed antineutrinos into left-handed. If neutrino magnetic moments approach that suggested by the XENON1T experiment as a possible explanation of their excess of low energy electron events -- a value well beyond the moment predicted by the standard model -- helicities of relic Dirac (but not Majorana) neutrinos could be considerably randomized. I finally will discuss the implications of neutrino helicity rotation, as well as their Dirac vs. Majorana nature, on their detection rates via the Inverse Tritium Beta Decay reaction.
Venue: via Online
Event Official Language: English
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Seminar
High-throughput laboratory evolution with machine learning reveals constraints for drug resistance evolution
February 18 (Thu) at 10:00 - 11:00, 2021
Junichiro Iwasawa (Ph.D. Student, Department of Physics, Graduate School of Science, The University of Tokyo)
The understanding of evolution is crucial to tackle the problem of antibiotic resistance which is a growing health concern. Although the lack of sufficient data has long hindered the mechanism of evolution, laboratory evolution experiments equipped with high-throughput sequencing/phenotyping are now gradually changing this situation. The emerging data from recent laboratory evolution experiments have revealed repeatable features in evolutionary processes, suggesting the existence of constraints on evolutionary outcomes [1,2]. Despite its importance for understanding evolution, however, we still lack a systematic investigation for evolutionary constraints. In this seminar, I would like to talk about two projects on the investigation of evolutionary constraints using data acquired from laboratory evolution of Escherichia coli. In the first half, I will explain how to extract an effective latent space for probing constraints in resistance evolution using gene expression data. We will further discuss what kind of structure exists in this space [3]. In the latter half, I will talk about our recent study on how to construct a predictive model for evolution using the information of evolutionary constraints.
Venue: via Zoom
Event Official Language: English
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Seminar
Journal Club: Large deviation statistics of Markovian quantum systems
February 17 (Wed) at 13:00 - 14:30, 2021
Ryusuke Hamazaki (Senior Research Scientist, RIKEN Interdisciplinary Theoretical and Mathematical Sciences Program (iTHEMS) / RIKEN Hakubi Team Leader, Nonequilibrium Quantum Statistical Mechanics RIKEN Hakubi Research Team, RIKEN Cluster for Pioneering Research (CPR))
Large deviation is a mathematical framework to treat “rare events” in random processes [1]. In this journal club, I talk about recent development of large deviation analysis in open Markovian quantum systems [2,3]. I first introduce the notion of large deviation statistics using the simple independent and identically distributed random variables. I then review recent development of level 2.5 large deviation statistics for classical Markovian jump processes and its application to thermodynamic uncertainty relation [4]. Finally, I discuss how the classical results are extended to quantum regime. *Detailed information about the seminar refer to the email.
Venue: via Zoom
Event Official Language: English
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Seminar
Mapping the Milky Way by VLBI Astrometry
February 16 (Tue) at 13:30 - 15:00, 2021
Nobuyuki Sakai (Korea Astronomy and Space Science Institute (KASI), Republic of Korea)
Astrometry is the only way to obtain 6D (position-velocity) phase space information for astronomical objects. The unique capability allows us to examine the past, present, and future of the Milky Way. Firstly, I will introduce history and basics of astrometry. Secondly, I will overview astrometric projects in the world. Thirdly, I will highlight recent astrometric results about the Galactic structure. Lastly, I will introduce astrometric research in Korea as well as future astrometric projects and sciences in 2020s and 30s.
Venue: via Zoom
Event Official Language: English
772 events