Volume 377

iTHEMS Weekly News Letter

Award

Takemasa Miyoshi thumbnail

Takemasa Miyoshi honored as “Distinguished Visitor” by the National University of Córdoba

2025-10-09

On September 4, 2025, Takemasa Miyoshi, Team Director at RIKEN iTHEMS, was honored as a “Distinguished Visitor (Visitante Distinguido)” by the National University of Córdoba, Argentina, in recognition of his significant contributions to climate and disaster prevention research.

Miyoshi leads the SATREPS project “PREVENIR: Development of a Numerical Weather Prediction and Disaster Information System for Densely Populated Areas Vulnerable to Meteorological Hazards,” promoting the development of early warning systems against urban floods.

Utilizing advanced simulation technologies and data science cultivated through Japan’s supercomputers K and Fugaku, the project aims to implement practical disaster prevention systems in the metropolitan areas of Buenos Aires and Córdoba. The initiative also fosters international collaboration and provides valuable opportunities for applied scientific education.

Researches & Researchers

Tomoya Nagai thumbnail

Math Is for Everyone—The Story Behind the MEXT Poster “Mathematics Connecting to the World”

2025-10-08

The poster for “Mathematics Connecting to the World: One S&T poster for Every Household,” part of a series by the Ministry of Education, Culture, Sports, Science and Technology (MEXT), catches the eye with its bright and colorful design. We spoke with two key members of the team behind the poster: Tomoya Nagai, Coordinator and Director of the Office of the Center Director at the RIKEN Interdisciplinary Theoretical and Mathematical Sciences Program (iTHEMS), and Takuya Shimada, planner and science communicator.

Please see the full article via the related link.

Upcoming Events

Colloquium

iTHEMS Colloquium

Why do we sleep? — The Role of Calcium and Phosphorylation in Sleep

October 10 (Fri) 15:30 - 17:00, 2025

Hiroki R. Ueda (Professor, Systems Pharmacology, Graduate School of Medicine, The University of Tokyo / Professor, Department of Systems Biology, Institute of Life Science, Kurume University)

Sleep remains one of greatest remaining mysteries. At the Sleep 2012 conference, we conceived a shift from the concept of “sleep substances” to “wake substances” such as calcium, suggesting that sleep homeostasis may arise from the integration of wake-related activity. Inspired by Dr. Setsuro Ebashi’s work on calcium signaling, we investigated calcium’s role in sleep regulation.

Using our Triple-CRISPR method (Sunagawa et al. 2016), we screened 25 genes related to calcium channels and pumps, revealing calcium as a brake on brain activity to promote sleep (Tatsuki et al. 2016). We also developed a tissue-clearing method CUBIC (Susaki et al. 2014; Tainaka et al. 2014) to visualize calcium’s effects on neural circuits. Further work showed that calcium-dependent enzymes, CaMKIIα/β kinases, act as calcium “memory” devices, with phosphorylation sites controlling sleep onset, duration, and termination (Tone et al. 2022). Other direct and indirect calcium-dependent phosphatases, Calcineurin and PP1 (sleep-promoting), and opposing kinases, PKA (wake-promoting), function as synaptic sleep switches (Wang et al. 2024).

We also identified the ryanodine receptor 1, a calcium channel, as a molecular target of inhalational anesthetics, hinting at shared pathways between anesthesia and sleep (Kanaya et al. 2025). Lastly, we proposed the WISE (Wake Inhibition Sleep Enhancement) mechanism, where quiet wakefulness suppresses and deep sleep strengthens synaptic connections, explaining links between sleep, depression, and antidepressant effects (Kinoshita et al. 2025).

Venue: Okochi Hall, 1F Laser Science Laboratory, RIKEN / via Zoom

Event Official Language: English

Seminar

Data Assimilation and Machine Learning

Temporal Evolution of Crustal Stress at Volcanoes During Periods of Unrest

October 14 (Tue) 10:30 - 12:00, 2025

Eric Newland (Research Fellow, Faculty of Mathematical & Physical Sciences, University College London, UK)

Eruptions that occur at volcanoes after periods of quiescence are difficult to forecast. Pathways that connect the source to the surface may have become sealed. The pressurisation of the source leads to the deformation of the crust. Initially the crust deforms elastically, strain is accommodated via ground movement and elastic strain energy is stored to the crust. Then, the deformation transitions to inelastic where strain is accommodated via brittle failure (volcano-tectonic event), and elastic strain energy is transferred from the crust.

We present a novel method to estimate the temporal evolution of elastic strain energy and bulk stress during periods of unrest. We consider the transfer of energy using measurements of surface deformation and seismic activity. We evaluate the temporal evolution of crustal bulk stress and investigate the progression of deformation in the crust. We apply our method to the unrest at the Campi Flegrei caldera, Italy from 2011-2024, and the eruption of Sierra Negra, Galapagos, 2018. Our calculations reveal that the bulk stress follows a characteristic progression, in which the stress initially increases linearly with time prior to the onset of significant seismicity, consistent with elastic deformation. We then observe a transition to inelastic deformation, when rate of elastic strain energy lost via fracturing increases and eventually exceeds the rate of elastic strain energy transferred to the crust. This results in a decrease in the bulk stress stored in the crust with time, indicating a progressive weakening of the crustal material due to seismicity-induced damage. Comparison with laboratory experiments show the behaviour is consistent with bulk failure in extension and the potential formation of new pathways in the crust.

Finally, we demonstrate how our method, along with the understanding of eruption precursors gained from the results, can be used to constrain deformation regimes at reawakening volcanoes after extended repose and to evaluate the hazard posed during periods of unrest.

Venue: Hybrid Format (RIKEN R-CCS room 107 and Zoom)

Event Official Language: English

Seminar

iTHEMS Biology Seminar

Why complexity persists: Evolutionary dynamics of the amylase locus in primates

October 16 (Thu) 12:30 - 13:45, 2025

Charikleia Karageorgiou (Postdoctoral Fellow, University at Buffalo, USA)

The amylase locus is among the most structurally variable regions of the human genome, frequently linked to starch digestion, metabolic traits, and dietary adaptation. Yet the causes of its recurrent duplication and exceptional variability remain unresolved. Why is this locus particularly prone to structural change? To address these questions, we analyzed 98 modern human genomes using long-read sequencing and optical mapping, alongside 53 high-quality primate assemblies. We identified 30 distinct amylase haplotypes in humans and documented more than 15 lineage-specific expansions and contractions across primates. Structural complexity appears to have been initiated by lineage-specific LTR insertions and subsequently shaped by non-allelic homologous recombination, with occasional contributions from microhomology-mediated break-induced replication. Independent duplications and salivary expression gains evolved repeatedly across primate lineages, but extensive within-species structural polymorphism is largely unique to humans. We further detected signatures of positive selection among primate paralogs, and dietary correlations with copy number suggest recurrent adaptive roles for amylase variation. The persistence of structural variation in this locus points to a unique combination of elevated mutational input, relaxed constraint, and ongoing selection, highlighting broader principles in the evolution of structurally unstable loci.

Venue: via Zoom / Seminar Room #359, 3F Main Research Building, RIKEN

Event Official Language: English

Seminar

ABBL-iTHEMS Joint Astro Seminar

Particle-in-Cell Simulations on Collisionless Shocks and Particle Acceleration in Black Hole Coronae

October 16 (Thu) 14:00 - 15:15, 2025

Nhat-Minh Ly (Ph.D. Student, Department of Physics, Osaka University)

Multiple nearby Active Galactic Nuclei have been reported as sources of high-energy neutrinos detected by the IceCube observatory. These results strongly suggest efficient proton acceleration to (sub-)PeV energies, likely within Black Hole (BH) coronae, given the lack of γ-ray counterparts. The acceleration mechanisms remain unconfirmed due to limited understanding of coronal environments and challenges in modeling hot, relativistic plasmas. Although diffusive shock acceleration (DSA) has been proposed, a self-consistent treatment incorporating detailed kinetic plasma effects has been lacking. In this study, we present the particle-in-cell (PIC) method as a first-principles approach to investigate particle acceleration by collisionless shocks under conditions inferred from multi-wavelength observations of BH coronae. Using large-scale 1D3V simulations, we surveyed shock parameters, focusing on underexplored effects such as initial ion–electron temperature ratios and trans-relativistic shock velocities, and found that collisionless shocks can form even in hot, low-Mach plasmas. These shocks accelerate protons up to ~100 TeV, consistent with the energies required for IceCube neutrino detections, across a wide range of coronal conditions. The shocks partition ~10% of dissipated energy into nonthermal protons and <1% into electrons, providing critical, observationally testable constraints on the plasma state of BH coronae.

Venue: Hybrid Format (3F #359 and Zoom), Seminar Room #359, 3F Main Research Building, RIKEN

Event Official Language: English

Seminar

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iTHEMS Math Seminar

Bonded Knotted Structures and Applications

October 16 (Thu) 16:00 - 18:00, 2025

Sofia Lambropoulou (Professor, School of Applied Mathematical and Physical Sciences, National Technical University of Athens, Greece)

We present the theory of bonded knots and bonded knotoids, as well as their algebraic counterparts, the theory of bonded braids and bonded braidoids. We also discuss some applications to the topological study of proteins.

Venue: via Zoom / Seminar Room #359, 3F Main Research Building, RIKEN

Event Official Language: English

Seminar

iTHEMS Math Seminar

Compact Association Schemes and Fourier Analysis

October 17 (Fri) 15:00 - 17:00, 2025

Akifumi Nakada (Ph.D. Student / JSPS Research Fellow DC, Graduate School of Advanced Science and Engineering, Hiroshima University)

Error-correcting codes are a fundamental tool in information and communication technologies. They can be viewed as collections of points in a space that are sufficiently far apart to allow error detection and correction.
More broadly, coding theory studies good arrangements of points in spaces. This theory has been particularly developed in the frameworks of association schemes and compact homogeneous spaces, where harmonic analysis plays a central role.
In this talk, we will begin with an introduction to error-correcting codes and then present compact association schemes, which we define as a generalization of these spaces in which harmonic analysis can be developed.

Venue: Hybrid Format (3F #359 and Zoom), Main Research Building, RIKEN Wako Campus

Event Official Language: English

Workshop

RIKEN–Berkeley Workshop on Quantum Gravity 2025

October 23 (Thu) - 24 (Fri) 2025

This workshop will serve as the first meeting of the collaboration between the Leinweber Institute for Theoretical Physics (LITP) at the University of California Berkeley and the RIKEN Center for Interdisciplinary Theoretical and Mathematical Sciences (iTHEMS). Participation is open and researchers from other institutions are welcome to attend. The workshop will feature talks on recent developments in the field of Quantum Gravity and other relevant topics.

Venue: via Zoom / #359 (23rd Morning) & #435-437 (23rd Afternoon & 24th Morning), Main Research Building, RIKEN Wako Campus

Event Official Language: English

Internal Meeting

The 1st Joint General Meeting of RIKEN Quantum and the QII RIKEN User Group

October 24 (Fri) 13:20 - 17:45, 2025

The joint general meeting is scheduled to be held at Okochi Hall from 13:20 to 17:45.
The networking reception is scheduled to be held at the RIKEN Cafeteria from 18:00 to 19:40.

Venue: Okochi Hall, 1F Laser Science Laboratory, RIKEN

Event Official Language: English

Seminar

Math & Computer SeminarKyushu University Collaboration Team

Introduction to Lean theorem prover

October 31 (Fri) 14:00 - 17:00, 2025

Yuma Mizuno (Postdoctoral Researcher, University College Cork, Ireland)

A theorem prover is a tool for the formalization of mathematics, that is, for rigorously expressing and verifying theorems and proofs on a computer. In recent years, the Lean theorem prover has seen progress in the formalization of a wide range of areas of mathematics. In this talk, I will explain formalization of mathematics in Lean from the basics and survey the formalized results achieved to date.

Venue: via Zoom / #359, Seminar Room #359, 3F Main Research Building, RIKEN

Event Official Language: English

Seminar

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GW-EOS WG Seminar

Pairing in Bose-Fermi and Fermi-Fermi systems

November 6 (Thu) 15:00 - 16:30, 2025

Pierbiagio Pieri (Associate Professor, Dipartimento di Fisica e Astronomia “Augusto Righi”, Università di Bologna, Italy)

This seminar is co-hosted by GWX-EOS Working Group and iTHEMS-ABBL Joint Astro Study Group.

Abstract:
In the first part of my talk, I will review recent work on Bose-Fermi mixtures with an attractive interaction inducing pairing between bosons and fermions. After discussing a recent experiment on this system [1], which has confirmed predictions obtained by us some time ago within a many-body diagrammatic approach [2], I will present novel results for the compressibility [3] that suggest a metastable nature for the many-body phase observed in [1]. Then, I will discuss the extension of our calculations to two-dimensional Bose-Fermi mixtures [4,5]. The results obtained in 2D challenge previous beliefs formulated for 3D systems.
In the second part, I will discuss attractive polarized Fermi systems, for which the Fulde-Ferrell-Larkin-Ovchinnikov (FFLO) phase was proposed many years ago as a possible superfluid phase. I will discuss how significant precursor FFLO fluctuation effects appear already in the normal phase of polarized Fermi gases at finite temperature [6], and how they could be experimentally detected with ultracold gases. At zero temperature [7], I will discuss how the quasi-particle parameters of the normal Fermi gas change when approaching an FFLO quantum critical point, with a complete breakdown of the quasi-particle picture analogous to what found in heavy-fermion materials at an antiferromagnetic quantum critical point.
Finally, I will discuss a recent joint experimental-theoretical work on the motion of a vortex orbiting a pinned anti-vortex in a strongly interacting Fermi gas [8], highlighting the interplay between Andreev bound states in the vortex core and delocalized thermal excitations in shaping the vortex dynamics.

References

  1. M. Duda, X.-Y. Chen, A. Schindewolf, R. Bause, J. von Milczewski, R. Schmidt, I. Bloch, X.-Y. Luo, Transition from a polaronic condensate to a degenerate Fermi gas of heteronuclear molecules, Nature Physics 19, 720 (2023), doi: 10.1038/s41567-023-01948-1
  2. A. Guidini, G. Bertaina, D. E. Galli. Pieri, Condensed phase of Bose-Fermi mixtures with a pairing interaction, Phys. Rev. A 91, 023603 (2015), doi: 10.1103/PhysRevA.91.023603
  3. C. Gualerzi, L. Pisani, P. Pieri, Mechanical stability of resonant Bose-Fermi mixtures, SciPost Physics 19, 039 (2025), doi: 10.21468/SciPostPhys.19.2.039
  4. J. D’Alberto, L. Cardarelli, D.E. Galli, G. Bertaina, P. Pieri, Quantum Monte Carlo and perturbative study of two-dimensional Bose-Fermi mixtures, Phys. Rev. A 109, 053302 (2024), doi: 10.1103/PhysRevA.109.053302
  5. P. Bovini, L. Pisani, F. Pavan, P. Pieri, Boson-fermion pairing and condensation in two-dimensional Bose-Fermi mixtures, SciPost Physics 18, 076 (2025), doi: 10.21468/SciPostPhys.18.3.076
  6. M. Pini, P. Pieri, G. Calvanese Strinati, Strong Fulde-Ferrell Larkin-Ovchinnikov pairing fluctuations in polarized Fermi systems, Phys. Rev. Res. 3, 043068 (2021), doi: 10.1103/PhysRevResearch.3.043068
  7. M. Pini, P. Pieri, G. Calvanese Strinati, Evolution of an attractive polarized Fermi gas: From a Fermi liquid of polarons to a non-Fermi liquid at the Fulde-Ferrell-Larkin-Ovchinnikov quantum critical point, Phys. Rev. B 107, 054505 (2023), doi: 10.1103/PhysRevB.107.054505
  8. Nicola Grani, Diego Hernández-Rajkov, Cyprien Daix, Pierbiagio Pieri, Michele Pini, Piotr Magierski, Gabriel Wlazłowski, Marcia Frómeta Fernández, Francesco Scazza, Giulia Del Pace, Giacomo Roati, Mutual friction and vortex Hall angle in a strongly interacting Fermi superfluid, arXiv: 2503.21628

Venue: Hybrid Format (3F #359 and Zoom), Seminar Room #359, 3F Main Research Building, RIKEN

Event Official Language: English

Seminar

Math & Computer SeminarKyushu University Collaboration Team

Rational function semifields of dimension one

November 7 (Fri) 13:30 - 15:30, 2025

JuAe Song (Assistant Professor, Faculty of Mathematics, Kyushu University)

Recently some researchers gave many studies toward algebro-geometric foundation for tropical geometry. I focused on rational function semifields of tropical curves and characterized them. With this characterization, in this talk, I suggest a definition of ``rational function semifield of dimension one". This definition can write out weight in the term of $\boldsymbol{T}$-algebra homomorphism, and can write balancing condition together with harmonic functions, where both weight and balancing condition are fundamental concepts for tropical varieties and $\boldsymbol{T}$ is the tropical semifield $(\boldsymbol{R} \cup \{-\infty\}, \operatorname{max}, +)$.

Venue: Seminar Room #359, 3F Main Research Building, RIKEN / via Zoom

Event Official Language: Japanese

Lecture

9th QGG Intensive Lectures – Correlation Effects in Quantum Many-Body Systems: Some Prototypical Examples in Condensed Matter Physics

November 19 (Wed) - 20 (Thu) 2025

Norio Kawakami (Deputy Director, Fundamental Quantum Science Program, TRIP Headquarters, RIKEN)

The ninth installment of the Intensive Lecture Series, organized by the Quantum Gravity Gatherings (QGG) study group at RIKEN iTHEMS, will feature Prof. Norio Kawakami from the Fundamental Quantum Science Program (FQSP) under RIKEN's Transformative Research Innovative Platform (TRIP). Over the course of two days, Prof. Kawakami will deliver a lecture series on quantum many-body systems.

In recent years, insights from quantum many-body physics have become central to research in quantum gravity, where correlation effects induced by gravity play nontrivial roles. By bridging perspectives from gravitational physics and quantum many-body dynamics, one hopes to understand how macroscopic spacetime and its geometric properties emerge from the collective behavior of quantum constituents at microscopic scales.

In this lecture series, Prof. Kawakami will introduce the fundamental properties of correlation effects through representative examples in condensed matter physics. A distinctive aspect of this event is its joint organization with the Fundamental Quantum Science Program (FQSP) at RIKEN. The goal is to further strengthen connections between the quantum gravity, condensed matter, and quantum information communities.

The lectures will be delivered in a blackboard-style format (in English), designed to foster interaction, active participation, and in-depth Q&A discussions. In addition, short talk sessions will be held, giving participants the opportunity to present briefly on topics of their choice. Through this informal and dynamic setting, we hope to spark active interactions among participants and create an environment where ideas can be shared openly and enthusiastically.

Abstract:
Some examples of theoretical methods to treat strongly correlated systems in condensed matter physics are explained. We start with the Kondo effect, which is one of the most fundamental quantum many-body problems and has been intensively studied to date in a wide variety of topics such as dilute magnetic alloys, heavy fermion systems, quantum dot systems, etc. Dynamical mean-field theory (DMFT) is then introduced, which enables us to systematically treat strongly correlated materials such as a Mott insulator. It is shown that the essence of DMFT is closely related to the Kondo effect. Furthermore, we explain how to apply conformal field theory (CFT) to treat correlation effects in one-dimensional electron systems.

Topics of these lectures include:

  1. Introduction to quantum many-body systems in condensed matter physics
  2. The Kondo effect: a prototypical quantum many-body problem
  3. Dynamical mean-field theory: a generic method to study correlation effects
  4. Application of CFT to correlated electron systems in one dimension

For more information, please visit the event webpage from the links below.

Venue: #435-437, 4F, Main Research Building, RIKEN Wako Campus

Event Official Language: English

Upcoming Visitor

October 10 (Fri) - November 2 (Sun) 2025

Charikleia Karageorgiou

Postdoctoral Fellow, University at Buffalo, USA

Visiting Place: Main Research Building

Person of the Week

Yuya Murakami thumbnail

Self-introduction: Yuya Murakami

2025-10-06

My goal in life is to connect people through mathematics.

Although mathematics is an accumulation of truths, with each step of my research I feel ever more strongly that doing mathematics is an endeavor made possible by human connections.
For me, those connections are a true blessing.
When I look at completed joint papers, I often think, “I could not have done this alone,” and in those moments I renew my gratitude for the people I have met.
Through experiences like these, I naturally came to wish that I could connect people through mathematics.
Through research, education, and outreach, I work every day to help connect people and, through those connections, to create new value for each person involved.

My research aims are to understand the mysterious object called "quantum modular forms" and, through that lens, to deepen the ties among number theory, topology, mathematical physics, and representation theory.

Quantum modular forms, introduced around 2010, are still young and full of mysteries.
Their significance lies in their role as a bridge that can reveal deep structures linking these four fields.
Focusing on this bridge—quantum modular forms—I work day by day to elucidate the relationships among these areas.

As a number theorist, I cannot pursue this agenda alone.
Many of my results to date have grown from collaborations with researchers specializing in topology.
I will continue to build cross-disciplinary partnerships so that the work is meaningful for multiple communities.

This research objective is aligned with my broader life goal of connecting people through mathematics, and I am committed to both.

The environment at iTHEMS, where interaction with researchers from diverse disciplines is the norm, is ideal for achieving these goals. I am grateful for this setting and will continue to move this work forward.

Paper of the Week

Week 2, October 2025

2025-10-09

Title: Latent Representation Learning in Heavy-Ion Collisions with MaskPoint Transformer
Author: Jing-Zong Zhang, Shuang Guo, Li-Lin Zhu, Lingxiao Wang, Guo-Liang Ma
arXiv: http://arxiv.org/abs/2510.06691v1

Title: The first proper motion measurement of the acceleration regions in the large-scale jets of SS 433 powering the W50 nebula
Author: Naomi Tsuji, Yoshiyuki Inoue, Dmitry Khangulyan, Kaya Mori, Samar Safi-Harb, Takaaki Tanaka, Laura Olivera-Nieto, Brydyn Mac Intyre, Kazuho Kayama, Takeshi Go Tsuru, Hiroyuki Uchida, Tatsuki Fujiwara, Felix Aharonian
arXiv: http://arxiv.org/abs/2510.06431v1

Title: Relevant Deformations, Brane Brick Models and Triality
Author: Mario Carcamo, Sebastian Franco, Dongwook Ghim, Georgios P. Goulas, Rak-Kyeong Seong
arXiv: http://arxiv.org/abs/2510.05517v1

Title: Testing the arrow of time at the cosmo collider
Author: Shuntaro Aoki, Alessandro Strumia
arXiv: http://arxiv.org/abs/2510.05204v1

Title: At most 10 cylinders mutually touch: a Ramsey-theoretic approach
Author: Travis Dillon, Junnosuke Koizumi, Sammy Luo
arXiv: http://arxiv.org/abs/2510.03924v1

Title: Mean-field limits à la Tanaka and large deviations for particle systems with network interactions
Author: Louis-Pierre Chaintron, Antoine Diez
arXiv: http://arxiv.org/abs/2510.04894v1

Title: Combining complex Langevin dynamics with score-based and energy-based diffusion models
Author: Gert Aarts, Diaa E. Habibi, Lingxiao Wang, Kai Zhou
arXiv: http://arxiv.org/abs/2510.01328v1

Title: Shadow of black holes with consistent thermodynamics
Author: Che-Yu Chen, Chiang-Mei Chen, Nobuyoshi Ohta
arXiv: http://arxiv.org/abs/2510.00708v1

Title: Digital quantum simulation of many-body localization crossover in a disordered kicked Ising model
Author: Tomoya Hayata, Kazuhiro Seki, Seiji Yunoki
arXiv: http://arxiv.org/abs/2510.01983v1

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