Volume 326

iTHEMS Weekly News Letter

Press Release

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Discovery of a Sustained Magnetic Flow in Ultracold Atomic Gases

2024-10-22

An international research group, including Yuta Sekino (Postdoctoral Researcher, iTHEMS / Postdoctoral Researcher, Nonequilibrium Quantum Statistical Mechanics RIKEN Hakubi Research Team) has discovered a mechanism that generates a long-lasting magnetic flow using ultracold atomic gases.

This research result is expected to contribute to the realization of quantum simulators, which are essential for the development of highly efficient next-generation magnetic memory.

For further details, please refer to the related link.

Reference

  1. Yuta Sekino, Yuya Ominato, Hiroyuki Tajima, Shun Uchino, and Mamoru Matsuo, Thermomagnetic Anomalies by Magnonic Criticality in Ultracold Atomic Transport, Phys. Rev. Lett. 133, 163402 (2024), doi: 10.1103/PhysRevLett.133.163402

Seminar Report

iTHEMS Biology Seminar by Hirokazu Fukuda on October 17, 2024

2024-10-23

On October 17, Dr Hirokazu Fukuda delivered a thought-provoking presentation titled “Digital Twinning of Plant Internal Clocks for Robotics and Virtual Reality Enhancements in Agriculture.”

In Japan, the agricultural workforce has decreased by more than 30% over the past decade, creating a growing demand for technological innovations like robotics and AI to support the industry.

Dr Fukuda shared his theoretical research, which focuses on understanding so-called, biological clocks that regulate our physiological processes. He has applied this knowledge to operate plant factories, successfully cultivating crops such as lettuce. He emphasized the importance of real-time 3D simulations in future "AI plant factories," where robots will play a central role based on data gathered from sensors within the facility.

During his presentation, Dr Fukuda highlighted the role of mathematical research, especially in developing predictive models for plant growth. The seminar, held via Zoom, attracted more than 30 participants and sparked an active and engaging discussion. Thanks Fukuda san for great presentation!!

Reported by Gen Kurosawa

Seminar Report

Workshop: The 5th "Medicine and Mathematics" Workshop on September 29, 2024

2024-10-22

The 5th “Medicine and Math” workshop took place on September 29th (Sun.) and 30th (Mon.), 2024, at RIKEN Integrated Innovation Building (IIB) in a hybrid format. This workshop series, which started at Kyoto University in 2019 and continued online in 2020, at Kyoto University in a hybrid format in 2022, and at Tohoku University in a hybrid format in 2023, aims to establish a new academic field that addresses questions and hypotheses in the field of clinical medicine with the aid of precise measurement, quantitative analyses, and mathematical modeling, by fusion of clinical science, mathematics, and physics. This year, the workshop was organized by Akihisa Yamamoto and Tetsuo Hatsuda (RIKEN iTHEMS), Motomu Tanaka (Heidelberg University, Kyoto University), Hiroshi Suito (Tohoku University, RIKEN iTHEMS), Eiryo Kawakami (RIKEN R-IH, Chiba University) and Takashi Sakajo (Kyoto University, RIKEN iTHEMS). It was co-hosted by RIKEN iTHEMS, Center for Integrative Medicine and Physics (CiMPhy, Kyoto University), Mathematical Science Center for Co-creative Society (MathCCS, Tohoku University), and Center for Science Adventure and Collaborative Research Advancement (SACRA, Kyoto University).

The workshop had approximately 50 participants onsite and 50 participants online each day. The event featured 20 invited speakers and 12 poster presentations covering various fields such as cancer, pulmonology, ophthalmology, dentistry, primordial germ cells, cell dynamics, data science, and deep learning. The presentations included interdisciplinary studies and led to fruitful discussions among participants from different professional fields. Each day of the workshop began with welcoming remarks from Kohei Miyazono (Executive Director, RIKEN), Motoko Kotani (Executive Vice President, Tohoku University) on Day 1, and Nagahiro Minato (President, Kyoto University) on Day 2.

Reported by Akihisa Yamamoto

Researches & Researchers

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New Perspectives from the Intersection of Mathematics and Physics - Yuto Moriwaki

2024-10-23

When people think of research in quantum field theory, most imagine physicists. However, Special Postdoctoral Researcher Yuto Moriwaki is a mathematician. In this interview, we asked Moriwaki about the allure and challenges of working across the fields of mathematics and physics.
Please see the full article via the related link.

Upcoming Events

Seminar

iTHEMS Theoretical Physics Seminar

Holographic Gubser flow

October 29 (Tue) at 13:30 - 14:30, 2024

Sukrut Mondkar (Postdoctoral Researcher, Harish-Chandra Research Institute, India)

Gubser flow is an evolution with cylindrical and boost symmetries, which can be best studied by mapping the future wedge of Minkowski space ℝ^{(3,1)} to dS_3 × ℝ in a conformal relativistic theory. Here, we sharpen the analytic results of Banerjee, Mitra, Mukhopadhyay Soloviev, EPJC (2024) and validate them via the first numerical exploration of the Gubser flow in a holographic conformal field theory. Remarkably, the leading generic behavior at large de Sitter time is free-streaming in transverse directions and the sub-leading behavior is that of a color glass condensate. We also show that Gubser flow can be smoothly glued to the vacuum outside the future Minkowski wedge generically given that the energy density vanishes faster than any power when extrapolated to early proper time or to large distances from the central axis. We find that at intermediate times the ratio of both the transverse and longitudinal pressures to the energy density converge approximately to a fixed point which is hydrodynamic only for large initial energy densities. We argue that our results suggest that the Gubser flow is better applied to collective behavior in jets rather than the full medium in the phenomenology of heavy ion collisions and can reveal new clues to the mechanism of confinement. The talk will be based on Mitra, Mondkar, Mukhopadhyay, Soloviev, arxiv:2408.04001/hep-th (accepted for publication in JHEP).

Venue: Hybrid Format (3F #359 and Zoom), Main Research Building, RIKEN

Event Official Language: English

Workshop

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Knitting Day

November 1 (Fri) at 10:00 - 16:00, 2024

Tomohiko Sano (Senior Assistant Professor, Department of Mechanical Engineering, Faculty of Science and Technology, Keio University)
Samuel Poincloux (Assistant Professor, Department of Physics and Mathematics, College of Science and Engineering, Aoyama Gakuin University)
Taiki Goto (Master's Student, Keio University)
Daisuke Shimamoto (Master's Student, The University of Tokyo)
Kotone Tajiri (Master's Student, Keio University)
Sonia Mahmoudi (Assistant Professor, Mathematical Science Group, Advanced Institute for Materials Research (AIMR), Tohoku University)

The 'Knitting Day' event is a one-day gathering that brings together students and researchers from diverse fields to explore the fascinating connections between the topology and mechanics of knitting. It aims to foster interdisciplinary discussions on how knitting techniques can be understood through mathematical, physical, and engineering lenses and their potential applications in industry.

This event is organized with the Interdisciplinary Math Study Group.

Schedule:

10:00 – 10:30: Welcome coffee

10:30 – 11:00: Samuel Poincloux

11:10 – 11:30: Kotone Tajiri

11:30 – 12:00: Discussion

12:00 – 13:00: Lunch

13:00 – 13:30: Daisuke Shimamoto

13:40 – 14:00: Taiki Goto

14:00 – 14:30: Discussion

14:30 – 15:10: Sonia Mahmoudi

15:10 – 16:00: Discussion & Coffee Break

16:00-18:00: Internal Discussion

From 18:00: Dinner

Titles:

Taiki Goto: Twist deformation in trefoil knot
Sonia Mahmoudi: A new topological model of knitting
Samuel Poincloux: Knit mechanics and frictional troubles
Daisuke Shimamoto: TBA
Kotone Tajiri: Curling morphology of knitted fabrics: structure and mechanics

Venue: #345-347, 3F, Main Research Building, RIKEN

Event Official Language: English

Lecture

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The 6th Special Online Class for Junior and Senior High School Students: Hot Science in Kobe Right Now

November 2 (Sat) at 10:30 - 14:30, 2024

Genshiro Sunagawa (Team Leader, Laboratory for Hibernation Biology, RIKEN Center for Biosystems Dynamics Research (BDR))
Kento Sato (Team Leader, High Performance Big Data Research Team, RIKEN Center for Computational Science (R-CCS))
Kyosuke Adachi (Research Scientist, iTHEMS)
Safiye Esra Sarper (Special Postdoctoral Researcher, Laboratory for Developmental Morphogeometry, RIKEN Center for Biosystems Dynamics Research (BDR))

The RIKEN conducts a wide variety of research. In this session, four researchers working at the Kobe Campus in the fields of mathematical science, information science, and biology will present their work. From iTHEMS, Research Scientist Kyosuke Adachi will introduce his research, which aims to uncover the mechanisms of collective motion using physics and computers.

For those interested in participating, please check the event website via the related link for instructions on how to attend.

Venue: via Zoom

Event Official Language: Japanese

Workshop

iTHEMS Science Outreach Workshop 2024

November 15 (Fri) - 17 (Sun), 2024

This year's meeting on "Outreach of RIKEN iTHEMS 2024@Sendai&Zoom" will be held from FRI November 15 to SUN November 17, as a face-to-face meeting at TOKYO ELECTRON House of Creativity of Tohoku Forum for Creativity in cooperation with iTHEMS SUURI-COOL (Sendai) using ZOOM for the necessary part as well.

Venue: TOKYO ELECTRON House of Creativity, Katahira Campus, Tohoku University / via Zoom

Event Official Language: Japanese

Workshop

Entanglements & Applications

November 18 (Mon) at 9:30 - 15:00, 2024

Myfanwy Evans (Professor, Institute of Mathematics, University of Potsdam, Germany)
Stephen Hyde (Emeritus Professor, Materials Physics, Australian National University, Australia)
Toky Andriamanalina (Ph.D. Student, Institute of Mathematics, University of Potsdam, Germany)

9:30-10:30: Toky Andriamanalina

Title: Untangling 3-periodic entanglements of filaments and nets

Abstract: Entanglements of curves and nets can used to describe various biological and chemical structures, such as coordination polymers, liquid crystals, or DNA origami crystals. We recently developed new diagrammatic descriptions of 3-periodic entanglements. These new diagrams are drawn out of a projection along one axis of a unit cell of a 3-periodic structure. By using these diagrams, we define the notion of untangling number for 3-periodic structures, which is a measure of complexity of the entanglement.
Thanks to this, it is now possible to characterise the least tangled structures that we call ground states, and in particular we show that the rod packings are the generic ground states of entanglements of curves.

10:30-11:00: coffee break

11:00 - 12:00: Stephen Hyde

Title: Tangles... and untangles

Abstract: Knots, braids, links, self-entangled nets, multiple catenated infinite nets... are examples of what we call, simply, “tangles”. They are relevant to molecular-scale (bio)materials, from duplexed ssRNA to metal-organic frameworks.

We are interested in understanding:
1.Which tangles are “simple”?
2.How tangled is a tangle!?

Our tangle toolkit is a simple one: we assemble helices into networks, allowing a broad spectrum of tangles to be built, from knots to tangled nets. Interesting “simple” tangles are entanglements of the edges of Platonic polyhedra [1] and entangled 2-periodic nets [2].
A proposed answer to point 2. above will be discussed. if there is time.
The ideas are at present largely unpublished, and being working into a book to be published, we hope, in late 2025 [3].

13:00 - 14:00: Myfanwy Evans

Title: Can solvents tie knots? Helical folds of biopolymers in liquid environments.

Abstract: Using a simulation technique based on the morphometric approach to solvation, we performed computer experiments which fold a short open flexible tube, modelling a biopolymer in aqueous environments, according to the interaction of the tube with the solvent alone. We find an array of helical geometries that self-assemble depending on the solvent conditions, including symmetric double helices where the strand folds back on itself and overhand knot motifs. Interestingly these shapes—in all their variety—are energetically favoured over the optimal helix. By differentiating the role of solvation in self–assembly our study helps illuminate the energetic background scenery in which all soluble biomolecules live.

This event is organized with the Interdisciplinary Math Study Group.

References

  1. Hyde, Stephen T., and Myfanwy E. Evans, Symmetric tangled Platonic polyhedra, Proceedings of the National Academy of Sciences 119.1: e2110345118 (2022)
  2. Evans, Myfanwy E., and Stephen T. Hyde, Symmetric Tangling of Honeycomb Networks, Symmetry 14.9: 1805 (2022)
  3. Evans, Myfanwy and Hyde, Stephen T., The Structure of Tangles, Oxford University Press, to be published

Venue: Seminar Room #359, 3F Main Research Building, RIKEN

Event Official Language: English

Seminar

DEEP-IN Seminar

Solving inverse problem via latent variable optimization of diffusion models: An application to CT reconstruction

November 25 (Mon) at 14:00 - 15:00, 2024

Sho Ozaki (Assistant Professor, Graduate School of Science and Technology, Hirosaki University)

Inverse problems are widely studied in various scientific fields, including mathematics, physics, and medical imaging (such as CT and MRI reconstructions). In this talk, I will present a novel method for solving inverse problems using the diffusion model, with an application to CT reconstruction. The diffusion model, which is a core component of recent image-generative AI, such as Stable Diffusion and DALL-E3, is capable of producing high-quality images with rich diversity. The imaging process in CT (i.e., CT reconstruction) is mathematically an inverse problem. When the radiation dose is reduced to minimize a patient's exposure, image quality deteriorates due to information loss, making the CT reconstruction problem highly ill-posed. In the proposed method, the diffusion model, trained with a large dataset of high-quality images, serves as a regularization technique to address the ill-posedness. Consequently, the proposed method reconstructs high-quality images from sparse (low-dose) CT data while preserving the patient's anatomical structures. We also compare the performance of the proposed method with those of other existing methods, and find that the proposed method outperforms the existing methods in terms of quantitative indices.

Reference

  1. Sho Ozaki, Shizuo Kaji, Toshikazu Imae, Kanabu Nawa, Hideomi Yamashita, Keiichi Nakagawa, Iterative CT Reconstruction via Latent Variable Optimization of Shallow Diffusion Models, arXiv: 2408.03156

Venue: #359, 3F, Seminar Room #359, 3F Main Research Building, RIKEN / via Zoom

Event Official Language: English

Colloquium

The 27th MACS Colloquium thumbnail
Maskawa Building for Education and Research venue photo

MACS ColloquiumSupported by iTHEMS

The 27th MACS Colloquium

November 25 (Mon) at 14:45 - 18:00, 2024

Ryusuke Hamazaki (RIKEN Hakubi Team Leader, Nonequilibrium Quantum Statistical Mechanics RIKEN Hakubi Research Team, RIKEN Cluster for Pioneering Research (CPR))
Teruaki Enoto (Associate Professor, Department of Physics, Division of Physics and Astronomy, Graduate School of Science, Kyoto University)

14:45-15:00 Teatime discussion
15:00-16:00 Talk by Dr. Ryusuke Hamazaki (RIKEN Hakubi Team Leader, Nonequilibrium Quantum Statistical Mechanics RIKEN Hakubi Research Team)
16:15-17:15 Talk by Dr. Teruaki Enoto (Associate Professor, Department of Physics, Division of Physics and Astronomy, Graduate School of Science, Kyoto University)
17:15-18:00 Discussion

Venue: Maskawa Hall, 1F, Maskawa Building for Education and Research, North Campus, Kyoto University

Event Official Language: Japanese

Seminar

Detecting single gravitons with quantum controlled mechanical oscillators

December 16 (Mon) at 14:00 - 15:30, 2024

Germain Tobar (PhD Fellow, Stockholm University, Norway)

The quantisation of gravity is widely believed to result in gravitons - particles of discrete energy that form gravitational waves. But their detection has so far been considered impossible. Here we show that signatures of single gravitons can be observed in laboratory experiments. We show that stimulated and spontaneous single graviton processes can become relevant for massive quantum acoustic resonators and that stimulated absorption can be resolved through optomechanical read-out of single phonons of a multi-mode bar resonator. We analyse the feasibility of observing a signal from the inspiral, merger and post-merger phase of a compact binary inspiral. Our results show that single graviton signatures are within reach of experiments. In analogy to the discovery of the photoelectric effect for photons, such signatures can provide the first experimental evidence of the quantisation of gravity.

[1] G. Tobar, S. K. Manikandan, T. Beitel, and I. Pikovski, Nature Communications 15, 7229.
[2] G. Tobar, Igor Pikovski ,Michael E. Tobar, arXiv:2406.16898 (2024).

Venue: #359, 3F, Seminar Room #359, 3F Main Research Building, RIKEN

Event Official Language: English

Workshop

Integrated Innovation Building (IIB) venue photo

Third Workshop on Density Functional Theory: Fundamentals, Developments, and Applications (DFT2025)

March 25 (Tue) - 27 (Thu), 2025

The density functional theory (DFT) is one of the powerful methods to solve quantum many-body problems, which, in principle, gives the exact energy and density of the ground state. The accuracy of DFT is, in practice, determined by the accuracy of an energy density functional (EDF) since the exact EDF is still unknown. Currently, DFT has been used in many communities, including nuclear physics, quantum chemistry, and condensed matter physics, while the fundamental study of DFT, such as the first principle derivations of an accurate EDF and methods to calculate many observables from obtained densities and excited states, is still ongoing. However, there has been little opportunity to have interdisciplinary communication.

On December 2022, we had the first workshop on this series (DFT2022) at Yukawa Institute for Theoretical Physics, Kyoto University, and several interdisciplinary discussions and collaborations were started. On February 2024, we had the second workshop on this series (DFT2024) at RIKEN Kobe Campus, and more stimulated discussion occured. To keep and extend collaborations, we organize the third workshop. Since the third workshop, we extend the scope of the workshop to the development and application of DFT as well. In this workshop, the current status and issues of each discipline will be shared towards solving these problems by meeting together among researchers in mathematics, nuclear physics, quantum chemistry, and condensed matter physics.

This workshop mainly comprises lectures/seminars on cutting-edge topics and discussion, while sessions composed of contributed talks are also planned.

Venue: 8F, Integrated Innovation Building (IIB), Kobe Campus, RIKEN / via Zoom

Event Official Language: English

Paper of the Week

Week 4, October 2024

2024-10-24

Title: Ceratozamia chinantlensis (Zamiaceae): A New Cycad Species from La Chinantla, Oaxaca, Mexico
Author: Miguel Angel Pérez-Farrera, Steven M. Ramirez-Oviedo, Mauricio Gerónimo Martínez-Martínez, Gaspar Moreno Mendez, Ana Guadalupe Rocha Loredo, José Said Gutiérrez-Ortega
Journal Reference: Taxonomy 2024, 4(4), 733-747
doi: https://doi.org/10.3390/taxonomy4040039

Title: Ceratozamia guatemalensis (Zamiaceae): A new cycad species from Mesoamerica
Author: Miguel Ángel Pérez-Farrera, Pedro Díaz-Jiménez, Maura L. Quezada, Andrea Marroquín-Tintí, Héctor M. Delgado-Montejo, Sandy A. Mendoza-Montejo, José Said Gutiérrez-Ortega
Journal Reference: Phytotaxa 668 (1): 63-80 (2024)
doi: https://doi.org/10.11646/phytotaxa.668.1.4

Title: Ceratozamia alba (Zamiaceae): A new cycad species from the Selva El Ocote Biosphere Reserve in Chiapas, Mexico
Author: Miguel Ángel Pérez-Farrera, Mauricio G. Martínez-Martínez, Gaspar Moreno-Méndez, Andrew P. Vovides, José Said Gutiérrez-Ortega
Journal Reference: Phytotaxa 666 (4): 257-276 (2024)
doi: https://doi.org/10.11646/phytotaxa.666.4.2

Title: Multi wavefunction overlap and multi entropy for topological ground states in (2+1) dimensions
Author: Bowei Liu, Junjia Zhang, Shuhei Ohyama, Yuya Kusuki, Shinsei Ryu
arXiv: http://arxiv.org/abs/2410.08284v1

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