Volume 364
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Research News
RIKEN NEWS: Interview with the Executive Director of Science — Unlocking the Future through the Synergy of Mathematical, Computational, and Information Sciences
2025-07-17
An interview with Tetsuo Hatsuda (Executive Director of Science, RIKEN / Director, the Division of Applied Mathematical Science, RIKEN iTHEMS) has been featured in the Close-up RIKEN 2025 series on RIKEN’s research introduction page.
To leverage RIKEN’s strength in integrated research capabilities and to ensure more strategic and effective operations, RIKEN introduced a new structure in FY2025 consisting of five “Research Domains.” Each domain is headed by an Executive Director of Science—a scientist with internationally recognized excellence and profound insight into both academic research and its administration. This system is designed to promote interdisciplinary collaboration rooted in advanced expertise, thereby accelerating the creation of new knowledge.
Supporting the Executive Directors of Science in driving research forward are the Promotion Directors.
This interview explores the aims of the Mathematical, Computational, and Information Sciences Domain from the perspectives of both researchers and administrative staff.
Please see the related links for the full article.
Upcoming Events
Seminar
GWX-EOS Seminar
Thermal evolution of accreting neutron stars
July 20 (Sun) 16:00 - 17:30, 2025
Martin Javier Nava-Callejas (Postdoc, Université Libre de Bruxelles, Belgium)
Neutron stars undergoing mass accretion at low-mass X-ray binary systems (LMXBs) represent an outstanding opportunity to test our current models for nuclear matter and its properties, in particular those related to thermonuclear reactions at the surface, as well as the evolution of their ashes via weak reactions. While some aspects are relatively well understood, there are others which call out for further attention or a re-examination of what we so far know. In this talk I will discuss the current state-of-art regarding the modelling of thermal evolution of these objects and will introduce a new method aimed to simplify the calculation of thermal evolution during accreting episodes.
Venue: via Zoom
Event Official Language: English
Seminar
iTHEMS Theoretical Physics Seminar
Peaks sphericity of non-Gaussian random fields
July 22 (Tue) 10:30 - 12:00, 2025
Michiru Uwabo (Ph.D. Student / JSPS Research Fellow DC, Faculty of Science, Ochanomizu University)
We formulate the statistics of peaks of non-Gaussian random fields and implement it to study the sphericity of peaks. For non-Gaussianity of the local type, we present a general formalism valid regardless of how large the deviation from Gaussian statistics is. For general types of non-Gaussianity, we provide a framework that applies to any system with a given power spectrum and the corresponding bispectrum in the regime in which contributions from higher-order correlators can be neglected. We present an explicit expression for the most probable values of the sphericity parameters, including the effect of non-Gaussianity on the profile. We show that the effects of small perturbative non-Gaussianity on the sphericity parameters are negligible, as they are even smaller than the subleading Gaussian corrections. In contrast, we find that large non-Gaussianity can significantly distort the peak configurations, making them much less spherical.
Reference
- Cristiano Germani (Barcelona U.), Mohammad Ali Gorji (IBS, Daejeon, CTPU), Michiru Uwabo-Niibo (IBS, Daejeon, CTPU and Ochanomizu U., Inst. Human. Sci.), Masahide Yamaguchi (IBS, Daejeon, CTPU and Nihon U., IQS), Peaks sphericity of non-Gaussian random fields, arXiv: 2503.05434
Venue: Hybrid Format (3F #359 and Zoom), Seminar Room #359, 3F Main Research Building, RIKEN
Event Official Language: English
Seminar
Quantum Foundation Seminar
Detectability of post-Newtonian classical and quantum gravity via quantum clock interferometry
July 22 (Tue) 14:00 - 15:00, 2025
Eyuri Wakakuwa (Associate Professor, Department of Mathematical Informatics, Graduate School of Informatics, Nagoya University)
Understanding physical phenomena at the intersection of quantum mechanics and general relativity remains a major challenge in modern physics. While various experimental approaches have been proposed to probe quantum systems in curved spacetime, most focus on the Newtonian regime, leaving post-Newtonian effects such as frame dragging largely unexplored. In this study, we propose and theoretically analyze an experimental scheme to investigate how post-Newtonian gravity affects quantum systems. We consider two setups: (i) a quantum clock interferometry configuration designed to detect the gravitational field of a rotating mass, and (ii) a scheme exploring whether such effects could mediate entanglement between quantum systems. Due to the symmetry of the configuration, the proposed setup is insensitive to Newtonian gravitational contributions but remains sensitive to the frame-dragging effect. Assuming the validity of the quantum equivalence principle, this approach may provide insights not only into the quantum nature of gravity but also into whether spacetime itself exhibits quantum properties. However, our analysis reveals that, within realistic experimental parameters, the expected effects are too small to be detected. We discuss possible interpretations of this undetectability, and its implications for tests of quantum gravity.
Venue: #445--447, 4F, Main Research Building, RIKEN Wako Campus / via Zoom
Event Official Language: English
Seminar
ComSHeL Seminar
ComSHeL collaboration planning
July 22 (Tue) 14:00 - 15:00, 2025
The objective of this 3rd monthly meeting of the ComSHeL Study Group is to discuss specific collaborations we could undertake across our own Teams/Divisions on projects of common interest to take advantage of our complementary skills and expertise. We also want to consider how ComSHeL could help respond to specific calls for focus in certain research areas within RIKEN and the broader funding landscape.
Venue: Hybrid Format (3F #359 and Zoom), Main Research Building, RIKEN Wako Campus
Event Official Language: English
Seminar
iTHEMS Theoretical Physics Seminar
A free probability approach to quantum chaos in random matrix ensembles
July 22 (Tue) 16:00 - 17:00, 2025
Pratik Nandy (Postdoctoral Researcher, Division of Fundamental Mathematical Science, RIKEN Center for Interdisciplinary Theoretical and Mathematical Sciences (iTHEMS))
In free probability theory, quantum chaos is marked by “free independence” between observables at early and late times, causing certain statistical measures (cumulants) to vanish. Motivated by this, we study the statistics of a time-evolved operator in the Rosenzweig-Porter (RP) random matrix ensembles. Analyzing operator statistics for different spin operators across these regimes reveals close alignment with free probability predictions in the ergodic phase, contrasted by persistent deviations in the fractal and localized phases even at late times. Using the distance measures and statistical methods, we define and characterize the onset of the free time in the ergodic phase. The talk is based on arXiv: 2506.04520.
Venue: Hybrid Format (3F #359 and Zoom), Seminar Room #359, 3F Main Research Building, RIKEN
Event Official Language: English
Seminar
iTHEMS Theoretical Physics Seminar
Mesoscopic transport via one-dimensional chain with Localized two-body loss
July 23 (Wed) 10:00 - 11:30, 2025
Kensuke Kakimoto (Ph.D. Student, Faculty of Science and Engineering, School of Fundamental Science and Engineering, Waseda University)
Mesoscopic transport has long served as a powerful probe into the quantum behavior of matter; however, the role of dissipation in such systems remains unresolved. In recent years, quantum simulations of mesoscopic systems with ultracold atomic gases have made significant progress, particularly through the use of optical tweezers to induce local dissipation via atom loss. In this talk, we discuss a two-terminal mesoscopic system in which two-body loss occurs locally at the center of a one-dimensional chain, modeling a dissipative quantum point contact. To analyze this setup, we employ the Keldysh Green’s function formalism in combination with a noise-field representation of Lindblad dynamics. Our analysis reveals that the dissipation strength depends on the occupation number of the central dissipative site, leading to a weaker suppression of particle current in the weakly dissipative regime compared to the case of one-body loss.
Reference
- Kensuke Kakimoto and Shun Uchino, Quantum Point Contact with Local Two-body Loss (2025), arXiv:2505.24391 (2025), doi: 10.48550/arXiv.2505.24391, arXiv: 2505.24391
Venue: Hybrid Format (3F #359 and Zoom), Seminar Room #359, 3F Main Research Building, RIKEN
Event Official Language: English
Seminar
Math-Phys Seminar
Supersymmetric field theories and homotopy theory
July 23 (Wed) 13:00 - 14:30, 2025
Mayuko Yamashita (Junior Research Faculty member, Perimeter Institute for Theoretical Physics, Canada)
I will give a general introduction and overview on the Segal-Stolz-Teichner program, which tries to relate supersymmetric field theories in physics with homotopy theory in mathematics.
Venue: Seminar Room #359, 3F Main Research Building, RIKEN / via Zoom
Event Official Language: English
Seminar
iTHEMS Theoretical Physics Seminar
Bridging applied math and quantum many-body physics and beyond via tensor methods
July 23 (Wed) 16:00 - 17:00, 2025
Hiroshi Shinaoka (Associate Professor, Department of Physics, Saitama University)
In modern physics, high-dimensional functions and operators naturally arise in a wide range of contexts, including turbulence simulations, parameter-dependent partial differential equations (PDEs), and quantum field theory. Efficient representations and computations with such high-dimensional objects pose major challenges across disciplines.
Dimensionality reduction techniques such as the Quantics Tensor Train (QTT) [1] and Tensor Cross Interpolation (TCI) [2] were originally developed in applied mathematics. In our work, we have extended these methods to quantum many-body problems, demonstrating their effectiveness in handling complex high-dimensional structures in theoretical physics [3–10].
Given their generality, QTT and TCI are expected to find applications beyond quantum theory itself, in fields such as statistical field theory, model reduction, and control of complex systems, where similar high-dimensional structures emerge.
This presentation will first review the computational bottlenecks that arise in quantum many-body simulations and other high-dimensional problems. Then, we will introduce QTT and TCI from a broader, method-oriented perspective, aiming to bridge applied mathematics and quantum theoretical physics.
References
- I. V. Oseledets, Doklady, Math. 80, 653 (2009)
- I. V. Oseledets, SIAM Journal on Scientific Computing 33, 2295 (2011)
- H. Shinaoka, M. Wallerberger, Y. Murakami, K. Nogaki, R. Sakurai, P. Werner, A. Kauch, Phys. Rev. X 13, 021015 (2023)
- M. K. Ritter, Y. Núñez-Fernández, M. Wallerberger, J. von Delft, H. Shinaoka, X. Waintal, Phys. Rev. Lett. 132, 056501 (2024)
- Y. Núñez-Fernández, M. Jeannin, P. T. Dumitrescu, T. Kloss, J. Kaye, O. Parcollet, X. Waintal, Phys. Rev. X 12, 041018 (2022)
- Y. Núñez-Fernández, M. K. Ritter, M. Jeannin, J.-W. Li, T. Kloss, T. Louvet, S. Terasaki, O. Parcollet, J. von Delft, H. Shinaoka, X. Waintal, SciPost Phys. 18, 104 (2025)
- S. Rohshap, M. K. Ritter, H. Shinaoka, J. von Delft, M. Wallerberger, A. Kauch, Phys. Rev. Research 7, 023087 (2025)
- H. Ishida, N. Okada, S. Hoshino, H. Shinaoka, arXiv: 2405.06440
- M. Murray, H. Shinaoka, P. Werner, Phys. Rev. B 109, 165135 (2024)
- M. Środa, K. Inayoshi, H. Shinaoka, P. Werner, High-resolution nonequilibrium GW calculations based on quantics tensor trains, arXiv: 2412.14032
Venue: Hybrid Format (3F #359 and Zoom), Seminar Room #359, 3F Main Research Building, RIKEN
Event Official Language: English
Others
iTHEMS Now & Next 2025
July 24 (Thu) - 25 (Fri) 2025
We will hold this fiscal year’s annual in-house gathering, “iTHEMS NOW & NEXT,” as follows.
This event is a rare opportunity for all iTHEMS members, including visiting researchers, to gain a comprehensive overview of iTHEMS’s current activities and future directions.
Program
July 24th
9:30-9:45 Opening by Director Iso
9:45-10:10 Keynote lecture Sonia Mahmoudi
10:10-10:35 Keynote lecture Masazumi Honda
10:35 20-min break
10:55
Fundamental Quantum Science Program (FQSP) introduction
Working Group introduction 5-min each
11:30 Lunch break
13:30 Teams introduction part 1
RIKEN-Berkeley Center RIKENーBerkeley Center (Shigehiro Nagataki)
Mathematical Application Research Team (Motoko Kotani / Tsukasa Tada)
13:50 11 SG Presentation 5 min each
14:45 break
15:00 Flash talks & Poster session
18:00 Reception
July 25th
9:30 Keynote lecture Yuto Yamamoto
9:55 Keynote lecture Kyosuke Adachi
10:20 break
10:40 Teams introduction part 2
Prediction Science Research Team (Takemasa Miyoshi)
Medical Science Deep Learning Team (Jun Seita)
Medical Science Data-driven Mathematics Team (Eiryo Kawakami)
Quantum Mathematical Science Team (Tetsuo Hatsuda)
Mathematical Social Science Team (Yohsuke Murase)
11:30 Lunch
13:30 Flash Talk & Poster presentation
16:30 Concluding remark
Venue: 2F Large Conference Room, Administrative Headquarters, RIKEN Wako Campus / via Zoom
Event Official Language: English
Workshop
Co-hosted by iTHEMS
The Theory of Periodic Tangles & Their Interdisciplinary Applications
July 28 (Mon) - August 1 (Fri) 2025
The mathematical characterization of entanglement holds immense potential for describing the mechanical functions of diverse physical systems and materials. A universal interdisciplinary study, involving scientists, engineers, and artists promises both advance of the field itself and significant contribution to the research and design of innovative solutions for textiles, medical devices, polymers, molecular chemistry, or construction materials among others. The program seeks an alternative to the trial–and–error approach, bringing together academia and industry to seek new sustainable solutions and inspiration, contributing to society. It will consist not only of scientific exchanges but will promote cultural impact by organizing exhibitions or hands–on workshops. Additionally, it will encourage several discussions by providing networking opportunities and utilizing the unique venue of House of Creativity at Tohoku University.
This workshop will gather researchers from various disciplines and include invited lectures, a poster session, roundtable discussions, and brainstorming activities. Our focus will be on exploring the connections between knot theory and its applications in areas such as polymers and soft matter, textile mechanics, graphic design, and more.
This event includes a joint symposium between the WPI–AIMR (Tohoku University) and WPI–SKCM2 (Hiroshima University) on Friday, August 1st, 2025: INTERWOVEN: A WPI–AIMR & WPI–SKCM2 Symposium, Towards a Universal Topological Model of Entangled Structures for Sustainable Metamaterials
Please fill in the registration form by June 16th 2025.
Confirmed speakers (alphabetical order):
Jörn Dunkel (Massachusetts Institute of Technology)
Yuanyuan Guo (Tohoku University)
Tatsuki Hayama (Keio University)
Louis H. Kauffman (University of Illinois at Chicago)
Yuka Kotorii (Hiroshima University)
Sofia Lambropoulou (National Technical University of Athens)
Eleni Panagiotou (Arizona State University)
Pedro M. Reis (École Polytechnique Fédérale de Lausanne)
Takahiro Sakaue (Aoyama Gakuin University)
Vanessa Sanchez (Rice University)
Henry Segerman (Oklahoma State University)
Koya Shimokawa (Ochanomizu University)
Hiroshi Suito (Tohoku University)
Ryuichi Tarumi (Osaka University)
Hirofumi Wada (Ritsumeikan University)
Please refer to the workshop website via the relevant link for more details.
We are looking forward to your participation and to welcoming you to Sendai!
Venue: TOKYO ELECTRON House of Creativity, Katahira Campus, Tohoku University
Event Official Language: English
Workshop
Recent Developments and Challenges in Tensor Networks: Algorithms, Applications to science, and Rigorous theories
July 28 (Mon) - August 8 (Fri) 2025
Venue: Panasonic Hall, Yukawa Institute for Theoretical Physics, Kyoto University
Event Official Language: English
Seminar
iTHEMS Biology Seminar
Targeting SARS-CoV-2 RNA: Insights for RNA-Directed Drug Discovery
July 31 (Thu) 13:00 - 14:30, 2025
Mariia Ivonina (Postdoctoral Fellow, Platform for Inter/Transdisciplinary Energy Research (Q-PIT), Kyushu University)
Traditional pharmacology fights virus infections by targeting proteins including enzymes, receptors, and structural proteins to break up the viral machinery. Nucleic acid-targeting therapies, on the other hand, can act directly on the genetic code of viruses, blocking their replication or translation in host cells. Coronaviruses and HIV are examples of RNA viruses that use a process called -1 programmed ribosomal frameshifting (-1 PRF) to produce their viral proteins. In this process, the translating ribosome is forced to shift into the alternative reading frame, replicating mRNA in the wrong order. Using small-molecule compounds to block this mechanism could be a promising way to neutralize such viruses.
It is difficult to experimentally study the interactions between RNA and a drug candidate to understand where the drug binds and how it changes the shape of the viral RNA. I will discuss how Molecular Dynamics simulations are used to explore the conformational dynamics of mRNA structural elements and to investigate what happens when an antiviral agent binds to it. Additionally, I will show how the quantum-chemical orbital interaction analysis we developed, called Through-Space/Through-Bond Energy Decomposition Analysis (TS/TB-EDA), reveals which RNA nucleotides, at the atomic level, are critical for binding. This molecular modelling approach reveals strategies for targeting structured RNA elements — a crucial step toward expanding the arsenal of RNA-targeting therapeutics for future pandemics.
Venue: Hybrid Format (3F #359 and Zoom), Main Research Building, RIKEN Wako Campus
Event Official Language: English
Colloquium
iTHEMS Colloquium
Chemical and isotopic analyses of samples returned by the Hayabusa2 mission from the asteroid Ryugu
August 1 (Fri) 14:00 - 15:30, 2025
Tetsuya Yokoyama (Professor, Department of Earth and Planetary Sciences, School of Science, Institute of Science Tokyo)
The recent success of asteroid sample return missions has led to significant advances in Solar System science. JAXA's Hayabusa2 successfully retrieved and returned to Earth a total of 5.4 grams of samples from the C-type asteroid Ryugu. Sample return missions are critical to the scientific community, as they provide pristine, terrestrially unaltered extraterrestrial material. The analytical data obtained in laboratories for samples collected by space missions will facilitate the understanding of the formation and evolution of the Solar System. I was appointed deputy leader of the Initial Analysis Chemistry team of Hayabusa2 project, and was heavily involved in analyzing the chemical and isotopic compositions of Ryugu materials. A series of analyses of these samples indicated that the mineral, chemical, and isotopic compositions of Ryugu bear a strong resemblance to those of the Ivuna-type (CI) carbonaceous chondrites. CI chondrites have been recognized as a unique group of meteorites with a chemical composition similar to that of the solar photosphere except for highly volatile elements and Li. In the seminar, I will present the meaning and significance of the compositional similarity between Ryugu and CI chondrites. I will also present our recent activities in a new project called the Ryugu Reference Project, which was initiated to maximize the potential value of the returned samples.
Venue: 2F Large Conference Room, Administrative Headquarters, RIKEN Wako Campus / via Zoom
Event Official Language: English
Seminar
Math & Computer SeminarKyushu University Collaboration Team
LeanConjecturer: Automatic Generation of Mathematical Conjectures for Theorem Proving
August 1 (Fri) 16:00 - 18:00, 2025
Naoto Onda (Project Research Engineer, Research Administrative Division, Omron Sinic X Corporation)
We introduce LeanConjecturer, a pipeline for automatically generating university-level mathematical conjectures in Lean 4 using Large Language Models (LLMs). Our hybrid approach combines rule-based context extraction with LLM-based theorem statement generation, addressing the data scarcity challenge in formal theorem proving. Through iterative generation and evaluation, LeanConjecturer produced 12,289 conjectures from 40 Mathlib seed files, with 3,776 identified as syntactically valid and non-trivial, that is, cannot be proven by aesop tactic. We demonstrate the utility of these generated conjectures for reinforcement learning through Group Relative Policy Optimization (GRPO), showing that targeted training on domain-specific conjectures can enhance theorem proving capabilities. Our approach generates 103.25 novel conjectures per seed file on average, providing a scalable solution for creating training data for theorem proving systems. Our system successfully verified several non-trivial theorems in topology, including properties of semi-open, alpha-open, and pre-open sets, demonstrating its potential for mathematical discovery beyond simple variations of existing results.
Reference
- Naoto Onda, Kazumi Kasaura, Yuta Oriike, Masaya Taniguchi, Akiyoshi Sannai, Sho Sonoda, LeanConjecturer: Automatic Generation of Mathematical Conjectures for Theorem Proving, arXiv: 2506.22005
Venue: via Zoom / #359, Seminar Room #359, 3F Main Research Building, RIKEN
Event Official Language: English
Workshop
iTHEMS Cosmology Forum #4 - Evolving Cosmos: new physical insights from new spectroscopic data
August 4 (Mon) - 5 (Tue) 2025
Seshadri Nadathur (Associate Professor, University of Portsmouth, UK)
Andrei Cuceu (NASA Einstein Fellow, Lawrence Berkeley National Laboratory (LBNL), USA)
Gerrit Farren (Postdoc, Lawrence Berkeley National Laboratory (LBNL), USA)
Antonio De Felice (Associate Professor, Yukawa Institute for Theoretical Physics, Kyoto University)
Linda Blot (Project Assistant Professor, Kavli Institute for the Physics and Mathematics of the Universe (Kavli IPMU), The University of Tokyo)
Wen Yin (Associate Professor, Department of Physics, Graduate School of Science, Tokyo Metropolitan University)
iTHEMS Cosmology Forum Workshop is a series of short workshops, each focusing on an emerging topics in cosmology. The target audience is cosmologists, high-energy physicists and astronomers interested in learning about the subject, not just those who have already worked on the topic. The goal of the workshop is to provide working knowledge of the topic and leave dedicated time for discussions to encourage mutual interactions among participants.
The fourth workshop is dedicated to new physics discoveries enabled by new spectroscopic data. Nearly three decades after the discovery of accelerated expansion, there is at last compelling data pointing away from the simple cosmological constant. The results of new data hint at evolving dark energy, but the statistical significance and physical interpretation are both far from clear. Furthermore, another anticipated new physics measurement of the neutrino mass has also proven difficult. With this workshop, we aim to interrogate both the statistical evidence for new physics as well as the theoretical implications if these new results are confirmed.
This forum will consist of two days.
The workshop will be in English.
The workshops are organised by the iTHEMS Cosmology Forum working group, which is the successor of the Dark Matter Working Group at RIKEN iTHEMS.
Important dates:
July 18 - Registration deadline
August 4th, 5th - Workshop Days
Invited Speakers:
Sesh Nadathur (University of Portsmouth)
Andrei Cuceu (LBNL)
Gerrit Farren (LBNL)
Antonio De Felice (YITP)
Linda Blot (IPMU)
Wen Yin (TMU)
Venue: #435-437, 4F, Main Research Building, RIKEN Wako Campus
Event Official Language: English
Seminar
iTHEMS Biology Seminar
iTHEMS Biology welcomes another new member!
August 7 (Thu) 13:00 - 14:15, 2025
Sungsik Kong (Research Scientist, Division of Fundamental Mathematical Science, RIKEN Center for Interdisciplinary Theoretical and Mathematical Sciences (iTHEMS))
This meeting will be used to welcome another new members to the iTHEMS Biology Study Group: Dr. Sungsik Kong, who is joining iTHEMS Fundamental Division as a Research Scientist. He will give us a 15-20 min talk to introduce his research. If time permits, let's also use this time to catch up on each other's current research. I hope that many people will join us to welcome this new member and come meet him and hear about his research.
Venue: Changed to Zoom only
Event Official Language: English
Workshop
Kyushu University Collaboration Team
Crossroads of Virology and Mathematical Sciences
August 8 (Fri) 9:30 - 17:30, 2025
Makoto Takeda (Professor, Graduate School of Medicine, The University of Tokyo)
Yasuyuki Yamaji (Professor, Graduate School of Agricultural and Life Sciences, The University of Tokyo)
Kotaro Kiga (Director, Japan Institute for Helth Security)
Daishi Fujita (Associate Professor, Kyoto University Institute for Advanced Study (KUIAS))
Miyuki Koiso (Professor Emeritus, Kyushu University)
Daisuke Kuroda (Associate Professor, Department of Biosciences, College of Humanities and Sciences, Nihon University)
Catherine Beauchemin (Deputy Director, RIKEN Center for Interdisciplinary Theoretical and Mathematical Sciences (iTHEMS))
Shinichi Tanigawa (Associate Professor, Graduate School of Information Science and Technology, The University of Tokyo)
Takao Hashiguchi (Professor, Institute for Life And Medical Sciences, Kyoto University)
Hideo Fukuhara (Associate Professor, International Institute for Zoonosis Control, Hokkaido University)
Shohei Kojima (Special Postdoctoral Researcher, Genome Immunobiology RIKEN Hakubi Research Team, RIKEN Center for Integrative Medical Sciences (IMS))
Shuhei Miyashita (Assistant Professor, Graduate School of Agricultural Science, Tohoku University)
Ryoko Oishi-Tomiyasu (Professor, Institute of Mathematics for Industry, Kyushu University)
Suzuki Yuta (Principal Investigator, Japan Science and Technology Agency (JST))
Adnan Sljoka (Research Scientist, Molecular Informatics Team, RIKEN Center for Advanced Intelligence Project (AIP))
By creating a shared space for dialogue, we aim to stimulate new research directions and foster collaborative insights through the integration of mathematical sciences into studies of both the structural principles that govern viral form and function, and the dynamics of viral replication. We invite participation from both mathematical and theoretical scientists interested in the structure and replication mechanisms of viruses, as well as virologists who are open to exploring the potential of mathematical abstraction.
Program:
Morning Session I (Viruses)
10:00–10:20 Measles virus engineering
Makoto Takeda (The University of Tokyo, Graduate School of Medicine)
10:20–10:40 Plant immunity to potexviruses
Yasuyuki Yamaji (The University of Tokyo, Graduate School of Agricultural and Life Sciences)
10:40–11:00 Sophisticated phage infection strategies and bacterial defense responses
Kotaro Kiga (National Institute of Infectious Diseases)
Break (11:00–11:15)
Morning Session II (Molecules, Math)
11:15–11:35 Designing Polyhedral Molecular Architectures at Will
Daishi Fujita (Kyoto University, Institute for Advanced Study)
11:35–11:55 Anisotropic energy and (curved) polyhedron
Miyuki Koiso (Kyushu University)
11:55–12:15 Nature-Inspired Design of Two-Component Protein Assemblies: From Cytoskeleton-Like to Virus-Like Structures
Yuta Suzuki (JST PRESTO)
Lunch Break (12:15–13:20)
Afternoon Session I (Comp Sci, Math)
13:20–13:40 Computer-aided antibody design
Daisuke Kuroda (Nihon University, Department of Life Sciences)
13:40–14:00 Revealing Protein Allostery and Functional Dynamics via Rigidity Theory and NMR
Adnan Sljoka(RIKEN AIP)
14:00–14:20 Using mathematical models to identify experimental pitfalls when probing virus replication in vitro
Catherine Beauchemin (RIKEN iTHEMS)
14:20–14:40 Combinatorics behind statics and flexibility of graphs
Shinichi Tanigawa (The University of Tokyo, Graduate School of Information Science and Technology)
Break (14:40–14:55)
Afternoon Session II (Structures)
14:55–15:15 Glycoprotein structures in human pathogenic RNA viruses
Takao Hashiguchi (Kyoto University, Graduate School of Medicine and Biomedical Sciences)
15:15–15:35 Introduction of cryo-electron microscopy facilities at Hokkaido University
Hideo Fukuhara (Hokkaido University, Research Center for Zoonosis Control)
Break (15:35–15:50)
Afternoon Session III (Viruses, Math)
15:50–16:10 Human genetics during virus infection
Shohei Kojima (Keio University, Bio2Q)
16:10–16:30 Suicidal population resistance of land plants against viruses
Shuhei Miyashita (Tohoku University, Graduate School of Agricultural Science)
16:30–16:50 Mathematical and crystallographic perspectives in virology
Ryoko Tomiyasu (Kyushu University, IMI)
Organizers:
Catherine Beauchemin (RIKEN iTHEMS)
Makoto Takeda (University of Tokyo, Graduate School of Medicine)
Ryoko Tomiyasu (Kyushu University, IMI)
Venue: #359, 3F, Main Research Building, RIKEN Wako Campus / via Zoom
Workshop
iTHEMS-NCTS Workshop
August 18 (Mon) - 21 (Thu) 2025
This workshop aims to strengthen collaboration between researchers at RIKEN iTHEMS and the National Center for Theoretical Sciences in Taiwan. It will be a four-day event, with the first two days dedicated to interdisciplinary topics. The last two days will focus on specialized areas, with one day devoted to condensed matter physics and the other to high-energy physics, including quantum gravity.
Venue: via Zoom / RIKEN Wako Campus
Event Official Language: English
Seminar
Math & Computer SeminarKyushu University Collaboration Team
Computer Algebra with Deep Learning
September 5 (Fri) 15:00 - 17:00, 2025
Yuki Ishihara (Assistant Professor, Department of Mathematics, College and Science Technology, Nihon University)
Computer algebra is a field that aims to perform various mathematical calculations on computers. In recent years, there has been a surge in efforts to accelerate computer algebra algorithms using deep learning models such as “Transformer,” which is used in ChatGPT. In this lecture, I will introduce the results of joint research with Professor Kera et al. on learning Gröbner bases with Transformer.
Reference
- Yuki Ishihara, Computer Algebra with Deep Learning
Venue: via Zoom / #359, Seminar Room #359, 3F Main Research Building, RIKEN
Event Official Language: English
Conference
Supported by iTHEMS
XIIIth International Symposium on Nuclear Symmetry Energy (NuSym25)
September 8 (Mon) - 13 (Sat) 2025
[Scientific scope]
The symposium will address experimental and theoretical investigations of the equation-of-state (EoS) of nuclear matter at various isospin asymmetries. Such investigations include efforts in nuclear structure, nuclear reactions and heavy-ion collisions, as well as in astrophysical observations of compact stars and associated phenomena. An important role of the symposium is to unify efforts of the nuclear physics and astrophysics communities in addressing common research challenges.
Venue: Integrated Innovation Building (IIB), Kobe Campus, RIKEN
Event Official Language: English
Lecture
Supported by iTHEMS
8th QGG Intensive Lecture: Quantum reference frames and their applications in high-energy physics
September 24 (Wed) - 26 (Fri) 2025
Philipp Höhn (Assistant Professor, Qubits and Spacetime Unit, Okinawa Institute of Science and Technology Graduate University (OIST))
Quantum reference frames (QRFs) are a universal tool for dealing with symmetries in quantum systems. Roughly speaking, they are internal subsystems that transform in some non-trivial way under the symmetry group of interest and constitute the means for describing quantum systems from the inside in purely relational terms. QRFs are thus crucial for describing and extracting physics whenever no external reference frame for the symmetry group is available. This is in particular the case when the symmetries are gauge, as in gauge theory and gravity, where QRFs arise whenever building physical observables. The choice of internal QRF is typically non-unique, giving rise to a novel quantum form of covariance of physical properties under QRF transformations. This lecture series will explore this novel perspective in detail with a specific emphasis on applications in high-energy physics and gravity.
I will begin by introducing QRFs in mechanical setups and explain how they give rise to quantum structures of covariance that mimic those underlying special relativity. I will explain how this leads to subsystem relativity, the insight that different QRF decompose the total system in different ways into gauge-invariant subsystems, and how this leads to the QRF dependence of correlations, entropies, and thermal properties. We will then explore how relational dynamics in Hamiltonian constrained systems and the infamous "problem of time" can be addressed with clocks identified as temporal QRFs. In transitioning to the field theory setting, we will first consider hybrid scenarios, where QRFs are quantum mechanical, but the remaining degrees of freedom are quantum fields including gravitons. I will explain how this encompasses the recent discussion of "observers", generalized entropies, and gravitational von Neumann algebras by Witten et al. and how subsystem relativity leads to the conclusion that gravitational entanglement entropies are observer dependent. We will then discuss the classical analog of QRFs in gauge theory and gravity and how they can be used to build gauge-invariant relational observables and to describe local subsystems. This will connect with discussions on edge and soft modes in the literature, the former of which turn out to be QRFs as well. This has bearing on entanglement entropies in gauge theories, which I will describe on the lattice, providing a novel relational construction that overcomes the challenges faced by previous constructions, which yielded non-distillable contributions to the entropy and can be recovered as the intersection of "all QRF perspectives". Finally, I will describe how the classical discussion of dynamical reference frames can be used to build a manifestly gauge-invariant path integral formulation that opens up novel relational perspectives on effective actions and the renormalization group in gravitational contexts, which is typically plagued by a lack of manifest diffeomorphism-invariance. I will conclude with open questions and challenges in the field.
Program:
September 24
10:15 - 10:30 Registration and reception with coffee
10:30 - 12:00 Lecture 1
12:00 - 13:30 Lunch
13:30 - 15:00 Lecture 2
15:00 - 16:00 Coffee break
16:00 - 17:00 Lecture 3
17:10 - 18:10 Short talk session
18:20 - 21.00 Banquet
September 25
10:15 - 10:30 Morning discussion with coffee
10:30 - 12:00 Lecture 4
12:00 - 13:30 Lunch
13:30 - 15:00 Lecture 5
15:00 - 16:00 Coffee break
16:00 - 17:00 Lecture 6
17:10 - 18:10 Short talk session
September 26
10:15 - 10:30 Morning discussion with coffee
10:30 - 12:00 Lecture 7
12:00 - 13:30 Lunch
13:30 - 15:00 Lecture 8
15:00 - 16:00 Coffee break
16:00 - 17:00 Lecture 9 & Closing
Venue: #435-437, 4F, Main Research Building, RIKEN Wako Campus
Event Official Language: English
Lecture
Lectures on General Probabilistic Theories: From Introduction to Research Participation
October 6 (Mon) - 9 (Thu) 2025
Hayato Arai (JSPS Research Fellow, Graduate School of Arts and Sciences, The University of Tokyo)
(The deadline of the registration is on Sep 30.)
100 years have passed since quantum mechanics was born. The mathematical model has been describing the physical world remarkably well. However, the foundations of this model still remain unclear. A comprehensive understanding of quantum theory, including its foundations, is becoming even more important in an era where the demands of realizing quantum information technologies pose significant theoretical and experimental challenges.
The framework of General Probabilistic Theories (GPTs) is a modern approach to the foundations of quantum theory. It deals with mathematical generalizations of both classical and quantum theories and has attracted increasing attention in recent years. Roughly speaking, research on GPTs has three major objectives: characterizing the models of classical and quantum theories, investigating the fundamental limits of physical and information-theoretic properties arising from operational requirements, and deepening our understanding of the mathematical structures underlying classical and quantum theories. The studies of GPTs have provided many new perspectives on these topics. However, at the same time, there remain many important open problems in the field. For this reason, more researchers are encouraged to enter and contribute to research on GPTs.
This intensive three-day lecture series is designed to provide researchers and graduate students with the essential knowledge necessary for research on GPTs, starting from an introduction to the subject. The lectures will cover the mathematical foundations, physical and information-theoretic concepts, and both the established results and future directions of GPT research. The 1st day will present the necessary mathematical structures, including convex geometry, positive cones, and the operational formulation of probabilistic models. The 2nd day will explore composite systems, information-theoretic quantities, symmetries, and Euclidean Jordan algebras. The 3rd day will survey key results on discrimination and communication tasks, the characterization of classical and quantum theories, and open problems that connect GPTs to quantum information science and beyond.
Note: The content of each lecture may extend into the next slot or be covered earlier, depending on the pace of discussion and participant questions.
The 1st day (6th Oct.): Mathematical Introduction to GPTs
Venue: Large Meeting Room, 2F, Wako Welfare & Conference Building
10:30-12:00 Lecture 1 (Introduction and Mathematics on Positive Cones)
12:00-13:30 Lunch time
13:30-15:00 Lecture 2 (Mathematics on Positive Cones)
15:00-15:30 Coffee break
15:30-17:00 Lecture 3 (Introduction to General Models and Relation between Operational Probability Theories)
The 2nd day (7th Oct.): Physical and Information Theoretical Concepts in GPTs
Venue: Large Meeting Room, 2F, Wako Welfare & Conference Building
10:30-12:00 Lecture 4 (Composite Systems in GPTs)
12:00-13:30 Lunch time
13:30-15:00 Lecture 5 (Information Quantities)
15:00-15:30 Coffee break
15:30-17:00 Lecture 6 (Dynamics, Symmetry, and Euclidean Jordan Algebras)
The 3rd day (8th Oct): Previous and Future Studies in GPTs
Venue: Meeting Room 435-437, 4F, Wako Main Research Building
10:30-12:00 Lecture 7 (Discrimination and Communication Tasks)
12:00-13:30 Lunch time
13:30-15:00 Lecture 8 (Characterization of Classical and Quantum Theories)
15:00-15:30 Coffee break
15:30-17:00 Lecture 9 (Other Topics, Open Problems, and Future Directions)
18:00- Dinner
The day of no lecture (9th Oct): Open Discussion and Q&A
Research discussions will take place between the lecturer and participants in areas such as the hallways on the 3rd and 4th floors of the Main Research Bldg, RIKEN Wako Campus.
Venue: Welfare and Conference Bldg. 2F Meeting Room, RIKEN Wako Campus / #435-437, Main Research Building, RIKEN Wako Campus
Event Official Language: English
Paper of the Week
Week 3, July 2025
2025-07-17
Title: Wavefunction-based operator optimization for two-hadron systems in lattice QCD
Author: Yan Lyu, Sinya Aoki, Takumi Doi, Tetsuo Hatsuda, Kotaro Murakami, Takuya Sugiura
arXiv: http://arxiv.org/abs/2507.09933v1
Title: Decoding Two-Particle States in QCD with Spatial Wavefunctions
Author: Yan Lyu, Sinya Aoki, Takumi Doi, Tetsuo Hatsuda, Kotaro Murakami, Takuya Sugiura
arXiv: http://arxiv.org/abs/2507.09930v1
Title: Theoretical evaluation of decay mode of $ {}^{229m} \mathrm{Th} $ in solid samples
Author: Ryotaro Masuda, Tomoya Naito, Masashi Kaneko, Hiroyuki Kazama, So Hashiba, Kosuke Misawa, Yoshitaka Kasamatsu
arXiv: http://arxiv.org/abs/2507.09064v1
Title: Supernova-induced binary-interaction-powered supernovae: a model for SN2022jli
Author: Ryosuke Hirai, Philipp Podsiadlowski, Peter Hoeflich, Maxim V. Barkov, Conrad Chan, David Liptai, Shigehiro Nagataki
arXiv: http://arxiv.org/abs/2507.09974v1
Title: Hadron-Hadron Interactions from Lattice QCD: Theory meets Experiments
Author: Tetsuo Hatsuda
arXiv: http://arxiv.org/abs/2507.08359v1
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