Volume 310
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Seminar Report
DEEP-IN Seminar by Chen Xiaowen on June 27, 2024
2024-07-01
The latest DEEP-IN seminar, also a joint iTHEMS Biology seminar series, was held on June 27. The seminar featured an impressive talk by Dr. Chen Xiaowen, a postdoctoral researcher at LPENS, CNRS, France. Conducted virtually, the seminar attracted a broad audience interested in understanding collective behavior from a physics perspective.
Chen Xiaowen's talk, "Inferring Collective Behavior from Social Interactions to Population Coding," focused on the ubiquitous nature of collective behavior, from social animals to neural networks. These behaviors, encoded in interactions between individuals or cells, play critical roles in diverse biological systems. While recent advances in statistical physics have provided new insights, much of the traditional research has overlooked the temporal aspect, focusing instead on static, steady-state distributions.
Xiaowen introduced two significant advancements that address this gap by incorporating the temporal dynamics of collective behavior. The first study examined the co-localization patterns of social mice. By developing a novel inference method called generalized Glauber dynamics (GGD), the research team could capture both static and dynamic features of the data. The GGD dynamics not only explained these features effectively but also provided insights into the sociability of different mice strains through the inferred interactions.
The second part of the seminar focused on neuronal interactions in the larval zebrafish hindbrain. Although many details were left out in this part due to time constraints, Xiaowen provided a comprehensive overview of how dynamic analyses can fill the gap left by traditional static approaches and improve our understanding of neuronal interactions.
Stay tuned for more seminars and updates from the DEEP-IN events!
Reported by Lingxiao Wang
Inferring collective behavior from social interactions to population coding
June 27 (Thu) at 16:00 - 17:30, 2024
Upcoming Events
Colloquium
MACS ColloquiumSupported by iTHEMS
The 26th MACS Colloquium
July 8 (Mon) at 14:45 - 18:00, 2024
Satoshi Taguchi (Professor, Division of Earth and Planetary Sciences, Graduate School of Science, Kyoto University)
Michitaka Notaguchi (Professor, Division of Biological Sciences, Graduate School of Science, Kyoto University)
14:45-15:00 Teatime discussion
15:00-16:00 Talk by Prof. Satoshi Taguchi (Professor, Division of Earth and Planetary Sciences, Graduate School of Science, Kyoto University)
16:15-17:15 Talk by Prof. Yoshihiro Morishita (Professor, Division of Biological Sciences, Graduate School of Science, Kyoto University)
17:15-18:00 Discussion
Venue: Science Seminar House (Map 9)
Event Official Language: Japanese
Seminar
iTHEMS Biology Seminar
The role of demographic stochasticity in the evolution of spite and altruism
July 9 (Tue) at 16:00 - 17:00, 2024
Troy Day (Professor, Head of Department, Department of Mathematics and Statistics, Queen's University, Canada)
The evolution of spiteful and altruistic behaviour remains a fascinating and somewhat puzzling phenomenon. In recent years there has been interest in examining how stochasticity arising from a finite population size might affect the evolution of these traits. Some results suggest that such stochasticity can reverse the direction of selection and promote the evolution of traits like altruism and spitefulness that are selected against in very large (deterministic) populations. However, other results seem to call this finding into question. In this talk I will consider a simple but quite general model of spite and of altruistic behaviour and examine how demographic stochasticity affects the evolution of these traits. I will show that stochasticity can indeed affect the direction of evolution but not in the way that previous studies have suggested. The results also help to clarify the broader issue of how and why stochasticity can sometimes reverse the direction of evolution.
Venue: Hybrid Format (3F #359 and Zoom), Seminar Room #359, 3F Main Research Building, RIKEN
Event Official Language: English
Seminar
iTHEMS Theoretical Physics Seminar
Tensionless Strings in a Kalb-Ramond Background
July 10 (Wed) at 16:00 - 17:00, 2024
Ritankar Chatterjee (Ph.D. Student, Indian Institute of Technology Kanpur, India)
We investigate tensionless (or null) bosonic string theory with a constant Kalb-Ramond
background turned on. In analogy with the tensile case, we find that the constant Kalb-Ramond field
has a non-trivial effect on the spectrum only when the theory is compactified on an S^1 ⊗d
background with d ≥ 2. We discuss the effect of this constant background field on the tensionless
spectrum constructed on three known consistent null string vacua. We elucidate further
on the intriguing fate of duality symmetries in these classes of string theories when the
background field is turned on. Based on: https://arxiv.org/abs/2404.01385
Venue: Hybrid Format (3F #359 and Zoom), Main Research Building, RIKEN
Event Official Language: English
Lecture
Differential Topology Seminar: Rigidity and Flexibility of Isometric Embeddings
July 16 (Tue) at 15:00 - 16:30, 2024
Dominik Inauen (Academic Staff, University of Leipzig, Germany)
The problem of embedding abstract Riemannian manifolds isometrically (i.e. preserving the lengths) into Euclidean space stems from the conceptually fundamental question of whether abstract Riemannian manifolds and submanifolds of Euclidean space are the same. As it turns out, such embeddings have a drastically different behaviour at low regularity (i.e. C1) than at high regularity (i.e. C2). For example, by the famous Nash--Kuiper theorem it is possible to find C1 isometric embeddings of the standard 2-sphere into arbitrarily small balls in R3, and yet, in the C2 category there is (up to translation and rotation) just one isometric embedding, namely the standard inclusion. Analoguous to the Onsager conjecture in fluid dynamics, one might ask if there is a sharp regularity threshold in the Holder scale which distinguishes these flexible and rigid behaviours. In my talk I will review some known results and argue why the Holder exponent 1/2 can be seen as a critical exponent in the problem.
Venue: #609, Department of Mathematics, Faculty of Science Bldg. No. 6, , Kyoto University
Event Official Language: English
Seminar
Quantum Simulation in High Energy Nuclear Physics
July 18 (Thu) at 10:00 - 11:30, 2024
Xingyu Guo (Lecturer, Institute of Quantum Matter, South China Normal University, China)
Quantum simulation is a novel method of simulation physical systems with quantum computers. Compared to conventional methods, quantum algorithms have various advantages in doing non-perturvative calculations and real-time evolutions, which makes it very promising to apply them in high energy nuclear physics. We propose a systematic quantum algorithm, which integrates both the hadronic state preparation and the evaluation of real-time light-front correlators. This algorithm can be applied to the calculation of a wide range of quantities in high energy nuclear physics. As a demonstration, we calculate the parton distribution functions, the light-cone distribution amplitudes and scattering amplitudes in the 1+1 dimensional NJL model. The results are qualitatively consistent with QCD calculations.
Venue: Seminar Room #359, 3F Main Research Building, RIKEN / via Zoom
Event Official Language: English
Others
iTHEMS NOW & NEXT 2024
July 19 (Fri) at 9:30 - 18:00, 2024
9:30-10:00 Keynote by Lucy Mcneill
10:00-10:30 Keynote by Jose Said Gutierrez Ortega
10:35-11:05 Keynote by Puttarak Jai-akson
11:05-11:35 Keynote by Kannaka Kazuki
11:35-12:30 Lunch Time Session
12:30-13:30 Working Group / Study Group Report
13:30-15:30 Flash Talk & Poster Presentation Part 1
15:30-17:30 Flash Talk & Poster Presentation Part2
17:30 Concluding Remarks by the Director
18:00 reception
Venue: RIKEN Wako Campus, Head Quarter Build., 2F Large Conference Room / via Zoom
Event Official Language: English
Seminar
Quantum Matter Seminar
Probing Majorana excitations in the Kitaev magnet α-RuCl3 through bulk heat capacity measurements
July 22 (Mon) at 10:30 - 11:45, 2024
Kumpei Imamura (Ph.D. Student / JSPS Research Fellow DC, Department of Advanced Materials Science, The University of Tokyo)
Recently, the layered honeycomb material α-RuCl3 exhibits several anomalous features that are consistent with expectations of the Kitaev quantum spin liquid (KQSL) under in-plane magnetic field. Most remarkably, finite planar thermal Hall conductivity has been observed, whose magnitude is close to the half-integer quantization value expected for the chiral edge currents of Majorana fermions[1]. However, it has been reported that the thermal Hall conductivity shows strong sample dependence. Also, there are attempts to offer a different explanation by the bosonic edge excitations due to topological magnons or phonon. A key to distinguishing between fermionic and bosonic origins of unusual features in the high-field state of α-RuCl3 is the difference in the field angle dependence of the excitation gap.
Therefore, we distinguish these origins from combined low-temperature measurements of high-resolution specific heat and thermal Hall conductivity with rotating magnetic fields within the honeycomb plane. A distinct closure of the low-energy bulk gap is observed for the fields in the Ru-Ru bond direction, and the gap opens rapidly when the field is tilted. Notably, this change occurs concomitantly with the sign reversal of the Hall effect. General discussions of topological bands show that this is the hallmark of an angle rotation–induced topological transition of fermions, providing conclusive evidence for the Majorana-fermion origin of the thermal Hall effect in α-RuCl3[2].
Furthermore, to understand the nature of the high-field state, it is crucial to elucidate the effects of disorder, which inevitably exists in real materials. We artificially introduce point defects by electron irradiation and compare the low-energy excitations in the pristine and irradiated sample by high-resolution specific heat measurements. We observed an additional in-gap T-linear term in C/T, whose coefficient shows distinct field-sensitive behaviors suggestive of Majorana physics in the KSL. This can be interpreted by the weak localization of Majorana fermions, which is induced by the disorder[3]. Moreover, recently, we succeed in synthesizing very high-quality crystals of α-RuCl3[4].
References
- Y. Kasahara et al., Nature (London) 559, 227 (2018)
- K. Imamura et al., Sci. Adv. 10, eadk3539 (2024)
- K. Imamura et al., Phys. Rev. X 14, 011045 (2024)
- R. Namba, K. Imamura et al., arXiv: 2402.03986
Venue: via Zoom / Hybrid Format (3F #359 and Zoom), Seminar Room #359, 3F Main Research Building, RIKEN
Event Official Language: English
Seminar
iTHEMS Theoretical Physics Seminar
Thermal radiation exchange in primordial gravitational waves
July 18 (Thu) at 13:30 - 15:00, 2024
Atsuhisa Ota (Postdoctoral Fellow, Institute for Advanced Study, Hong Kong University of Science and Technology, China)
The radiation-dominated universe is a key component of standard Big Bang cosmology. Radiation comprises numerous quantum elementary particles, and its macroscopic behavior is described by taking the quantum thermal average of its constituents. The dynamics of gravitational waves are considered in this smooth fluid. While interactions between individual particles and gravitational waves are often neglected in this context, it raises the question of whether such a hydrodynamical approximation is reasonable. To address this question, we explored the quantum mechanical aspects of gravitational waves in a universe dominated by a massless scalar field, whose averaged energy-momentum tensor serves as background radiation. We computed thermal loop corrections for the gravitational wave power spectrum using the Schwinger-Keldysh formalism. Interestingly, we found that the loop effect enhances the super-horizon primordial gravitational wave spectrum, indicating that the inflationary spectrum is not conserved, contrary to conventional wisdom. These findings have significant implications for our understanding of the early universe. In this talk, I will begin with the basics of cosmology and explain the significance of these results and their relevant observational consequences.
Venue: Seminar Room #359, 3F Main Research Building, RIKEN / via Zoom
Event Official Language: English
Seminar
iTHEMS Biology Seminar
Multi-Agent Reinforcement Learning for Exploring Collective Behavior
July 25 (Thu) at 16:00 - 17:00, 2024
Kazushi Tsutsui (Assistant Professor, Graduate School of Arts and Sciences, The University of Tokyo)
Humans and other organisms develop collective behaviors through interactions with diverse environments and various species. These behaviors are significant topics across multiple research fields, including evolutionary biology, behavioral ecology, and animal sociology. Unraveling the decision-making mechanisms of individuals in groups within cooperative and competitive contexts has captured the attention of many researchers but remains a complex challenge. This seminar will present research cases that employ multi-agent reinforcement learning, a machine learning technique, to investigate the decision-making processes underlying collective behavior. Through this approach, we aim to provide deeper insights into the dynamics and mechanisms that drive group behaviors in various biological systems.
Reference
- Kazushi Tsutsui, Ryoya Tanaka, Kazuya Takeda, and Keisuke Fujii, Collaborative hunting in artificial agents with deep reinforcement learning, eLife 13, e85694 (2024), doi: 10.7554/eLife.85694
Venue: Hybrid Format (3F #359 and Zoom), Seminar Room #359, 3F Main Research Building, RIKEN
Event Official Language: English
Special Lecture
RIKEN iTHEMS & AIPmath Special Lecture: Contact geometry in 3-dimensional space and higher
July 29 (Mon) at 15:30 - 16:30, 2024
Emmy Murphy (Professor, Princeton University, USA)
In mathematics, contact geometry is a type of geometry describing a variety of dynamical systems. They are the phase spaces of systems arising in geometric optics, semi-classical quantum systems, classical dynamics, and control theory. On the mathematical side, contact geometry relates to a variety of other geometric structures, such as Kahler geometry, smooth topology, and foliation theory. It can be especially interesting to look at contact geometry in 3-dimensional space, because we can explicitly visualize the spaces. Additionally, by connecting contact geometry with our understanding of 3-D topology, mathematicians have the ability to understand the large-scale structure of these spaces like never before.
The talk will introduce the basics of contact geometry and its applications. We'll particularly focus on the 3-dimensional case, while also mentioning some of the unique properties of higher-dimensional spaces which are recently being explored.
Registration required: Register before Wednesday, July 24, 15:00.
Venue: RIKEN Tokyo Liaison Office (Nihonbashi) / via Zoom
Event Official Language: English
Others
What will Happen to iTHEMS⊗Masason Foundation Members?
August 2 (Fri) at 13:30 - 17:30, 2024
Venue: Seminar Room #359, 3F Main Research Building, RIKEN
Event Official Language: English
Upcoming Visitors
July 8 (Mon) - 10 (Wed), 2024 Troy DayProfessor, Head of Department, Department of Mathematics and Statistics, Queen's University, Canada Visiting Place: RIKEN Wako Campus |
July 9 (Tue) - 13 (Sat), 2024 Ritankar ChatterjeePh.D. Student, Indian Institute of Technology Kanpur, India Visiting Place: RIKEN Wako Campus |
Paper of the Week
Week 1, July 2024
2024-07-04
Title: Bispectrum from inflation/bouncing Universe in VCDM
Author: Alexander Ganz, Paul Martens, Shinji Mukohyama, Ryo Namba
arXiv: http://arxiv.org/abs/2407.02882v1
Title: Reconstruction of ringdown with excitation factors
Author: Naritaka Oshita, Vitor Cardoso
arXiv: http://arxiv.org/abs/2407.02563v1
Title: Pushforward measures on homogeneous spaces of non-unimodular groups and properties of modular functions
Author: Takashi Satomi
arXiv: http://arxiv.org/abs/2407.00670v1
Title: Groupoid homology and K-theory for algebraic actions from number theory
Author: Chris Bruce, Yosuke Kubota, Takuya Takeishi
arXiv: http://arxiv.org/abs/2407.01952v1
Title: 4D Chern-Simons theory with auxiliary fields
Author: Osamu Fukushima, Kentaroh Yoshida
arXiv: http://arxiv.org/abs/2407.02204v1
Title: Optimal version of the fundamental theorem of chronogeometry
Author: Michiya Mori, Peter Šemrl
arXiv: http://arxiv.org/abs/2406.18874v1
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