Volume 266

iTHEMS Weekly News Letter

Hot Topic

3rd Summer School of Mathematical Biology

2023-08-27

From the 23rd to the 25th of August 2023, the 3rd Summer School of Mathematical Biology took place at Sokendai University (Hayama, Kanagawa Prefecture). It was a lecture camp organized primarily by our iTHEMS colleagues, Daiki Kumakura and Keiichi Morita. The topics included virus evolution, immune response, coexistence theories in biology and rapid evolution, human migration and its processes, optimization strategies in marine organism reproduction, and modeling biological metabolism. At the summer school, Tetsuo Hatsuda (iTHEMS Director) also participated as an attendee. In the end, there was a fruitful event, including an introduction to iTHEMS. The summer school will be held again next year.

Seminar Report

Exploring 2D Quantum Spacetime Based on Causal Dynamical Triangulations by Yuki Sato on August 21, 2023

2023-08-25

The fourth set of intensive lectures organised by the iTHEMS Quantum Gravity Gatherings study group has now concluded. Approximately 15 participants joined this three day event in which we were given a comprehensive overview of the causal dynamical triangulations (CDT) approach to 2D quantum spacetime. Leading affairs was Dr Yuki Sato of the National Institute of Technology, Tokuyama College, who presented in a tightly organised and very pedagogical manner. Following some brief motivations for the CDT approach to quantum gravity and a summary of the numerical understanding of the theory in 4D, Sato-san began with an overview of discrete geometry in Lorentzian spaces and used this to introduce Lorentzian Regge calculus. The fundamental idea here is to realise curvature as a conical defect at certain codimension 2 regions of piecewise-flat manifolds. We concluded the first day by using this to construct the Lorentzian Einstein-Regge action in arbitrary dimension before specialising to the 2D case. We began the second day by explicitly quantising this 2D action and then proceeded to take its continuum limit, allowing for the deduction of the quantum Hamiltonian of the theory. We then briefly covered the formalism of 2D projectable Hořava–Lifshitz (PHL) gravity and demonstrated the equivalence of this theory to 2D CDT by showing that PHL gravity is described by the same Hamiltonian as in the CDT case. On the third day we learnt about a generalisation of the 2D CDT model allowing for topology change to occur, employing ideas from string field theory in the process; we studied a dual matrix model representation of the theory and derived an effective quantum Hamiltonian including the contribution of such wormhole configurations. Finally we saw how topology change in 2D generalised CDT could be realised in terms of stochastic time-dependent fluctuations of the cosmological constant in line with the so-called Coleman mechanism. In addition to the scientific activities above we had a number of short talks on the first and second days of the event by participants as well as a banquet on the first day where we were joined by several iTHEMS members. The intimate nature of the event lead to the active participation of attendees and overall a very lively and productive learning environment.

Reported by Christy Koji Kelly

Upcoming Events

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iTHEMS Seminar

The Cosmic Gravitational Microwave Background

September 6 (Wed) at 15:00 - 16:30, 2023

Jan Schuette-Engel (Postdoctoral Researcher, iTHEMS)

The thermal plasma in the early universe produced a guaranteed stochastic gravitational wave (GW) background, which peaks today in the microwave regime and was dubbed the cosmic gravitational microwave background (CGMB). I show that the CGMB spectrum encodes fundamental information about particle physics and gravity at ultra high energies. In particular, one can determine from the CGMB spectrum the maximum temperature of the universe and the effective degrees of freedom at the maximum temperature. I also discuss briefly how quantum gravity effects arise in the CGMB spectrum as corrections to the leading order result.

Venue: Hybrid Format (3F #359 and Zoom), Main Research Building, RIKEN

Event Official Language: English

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ABBL-iTHEMS Joint Astro Seminar

Collective Plasma Effects in Relativistic Radiation-Mediated Blast Waves

September 8 (Fri) at 14:00 - 15:15, 2023

Arno Vanthieghem (Princeton-NINS Postdoctoral Research Fellow, Department of Astrophysical Sciences, Princeton University, USA)

Relativistic radiation-mediated shocks (RRMS) dictate the early emission in numerous transient sources such as supernovae, low luminosity gamma-ray bursts, binary neutron star mergers, and tidal disruption events. These shock waves are mediated by Compton scattering and copious electron-positron pair creation. It has been pointed out that a high pair multiplicity inside the shock transition leads to a lepton-baryon velocity separation, prone to plasma instabilities. The interaction of the different species with this radiation-mediated microturbulence can lead to coupling and heating that is unaccounted for by current single-fluid models. Here, we present a theoretical analysis of the hierarchy of plasma microinstabilities growing in an electron-ion plasma loaded with pairs and subject to a radiation force. Our results are validated by particle-in-cell simulations that probe the nonlinear regime of the instabilities and the lepton-baryon coupling in the microturbulent electromagnetic field. Based on this analysis, we derive a reduced transport equation for the particles that demonstrates anomalous coupling of the species and heating in a Joule-like process by the joined contributions of the decelerating turbulence, radiation force, and electrostatic field. We will then discuss the effect of finite magnetization on the general dynamics and recent efforts toward a more self-consistent description of the coupling. In general, our results suggest that radiation-mediated microturbulence could have important consequences for the radiative signatures of RRMS.

Venue: via Zoom

Event Official Language: English

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iTHEMS Math Seminar

Quasi-BPS categories

September 13 (Wed) at 10:00 - 11:30, 2023

Yukinobu Toda (Professor, Kavli Institute for the Physics and Mathematics of the Universe (Kavli IPMU), The University of Tokyo)

In this talk, I will explain the notion of "Quasi-BPS category". This is the (yet to be defined) category which categorifies BPS invariants on Calabi-Yau 3-folds, and plays an important role in categorical wall-crossing in Donaldson-Thomas theory. I will explain the motivation of quasi-BPS categories, give definition in the case of symmetric quivers with potential (a local model of CY 3-folds), and their properties. If time permits, I will explain quasi-BPS categories for local K3 surfaces and their relation to derived categories of hyperkahler manifolds. This is a joint work in progress with Tudor Padurariu.

Venue: Seminar Room #359, 3F Main Research Building, RIKEN

Event Official Language: English

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Spider silk big data drives the creation of targeted biopolymers -from polymerization to biodegradation-

September 20 (Wed) at 13:30 - 15:00, 2023

Keiji Numata (Professor, Graduate School of Engineering, Kyoto University)

Our Material DX research project (http://pixy.polym.kyoto-u.ac.jp/ku_numata/index.html) is dedicated to addressing challenges in the design and synthesis of polymeric materials. Our primary objective is to establish a comprehensive material research and technical platform built upon a polymer database. Our efforts center on the creation and advancement of bioadaptive materials featuring biological functionalities and physical properties.1,2 Within the domain of polymer science, the integration of material informatics (MI) for establishing correlations between material structure and properties, along with the utilization of extensive databases, has not witnessed substantial advancement in recent times.

Structural protein such as spider silk is an eco- and bio-friendly polymer as well as one of the key factors to realize the unique properties and functions of natural tissues and organisms.3,4 However, use of structural proteins as structural materials in human life is still challenging. Spider silks are among the toughest known materials and thus provide models for renewable, biodegradable and sustainable biopolymers. However, the entirety of their diversity still remains elusive, and silks that exceed the performance limits of industrial fibers are constantly being discovered. We obtained transcriptome assemblies from 1,098 species of spiders to comprehensively catalog silk gene sequences and measured the mechanical, thermal, structural, and hydration properties of the dragline silks of 446 species.5 The combination of these silk protein genotype-phenotype data revealed essential contributions of multicomponent structures in high-performance dragline silks as well as numerous amino acid motifs contributing to each of the measured properties. We hope that our global sampling, comprehensive testing, integrated analysis and open data will provide a solid starting point for future biomaterial designs.

References

  1. Keiji Numata, Biopolymer Science for Proteins and Peptides, Elsevier (2021)
  2. Ali D. Malay, Hamish C. Craig, Jianming Chen, Nur Alia Oktaviani, and Keiji Numata, Complexity of Spider Dragline Silk, Biomacromolecules 23, 5, 1827–1840 (2022), doi: 10.1021/acs.biomac.1c01682
  3. Ali D Malay, Takehiro Suzuki, Takuya Katashima, Nobuaki Kono, Kazuharu Arakawa, Keiji Numata, Spider silk self-assembly via modular liquid-liquid phase separation and nanofibrillation, Science Advances, 6, 45, eabb6030 (2020), doi: 10.1126/sciadv.abb6030
  4. Nur Alia Oktaviani, Akimasa Matsugami, Ali D. Malay, Fumiaki Hayashi, David L. Kaplan & Keiji Numata, Conformation and dynamics of soluble repetitive domain elucidates the initial β-sheet formation of spider silk, Nature Communications 9, 2121 (2018), doi: 10.1038/s41467-018-04570-5
  5. Kazuharu Arakawa et al., 1000 spider silkomes: Linking sequences to silk physical properties, Science Advances 8 (41) eabo6043 (2022), doi: 10.1126/sciadv.abo6043

Venue: Seminar Room #359, 3F Main Research Building, RIKEN / via Zoom

Event Official Language: English

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iTHEMS Theoretical Physics Seminar

Induced gravitational waves from inflaton oscillons

September 22 (Fri) at 14:00 - 15:30, 2023

Kaloian Dimitrov Lozanov (Project Researcher, Kavli Institute for the Physics and Mathematics of the Universe (Kavli IPMU), The University of Tokyo)

We present a new way to study cosmic inflation with gravitational waves. The gravitational signal is generated thanks to nonlinear structures in the inflaton field, called oscillons. This novel probe allows us to test models of inflation which are challenging to test with CMB experiments.

Venue: Hybrid Format (3F #359 and Zoom), Main Research Building, RIKEN

Event Official Language: English

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ABBL-iTHEMS Joint Astro Seminar

Progenitors and Explosion Properties of Supernova Remnants Hosting Central Compact Objects

October 6 (Fri) at 10:00 - 11:30, 2023

Chelsea Braun (Ph.D. Student, Department of Physics and Astronomy, University of Manitoba, Canada)

Presented is a systematic, global study of Galactic supernova remnants (SNRs) hosting Central Compact Objects (CCOs) aimed at addressing their explosion properties and supernova progenitors. With the Chandra and XMM-Newton telescopes, a spatially resolved X-ray spectroscopy study is performed on seven SNRs that show evidence of shock-heated ejecta. Using an algorithm, we segmented each SNR in the sample into regions of similar surface brightness. These regions were fit with one- or two-component plasma shock model(s) in order to separate the forward-shocked interstellar medium from the reverse shock-heated ejecta which peak in the X-ray bands for elements including O, Ne, Mg, Si, S, Ar, Ca, and Fe. We subsequently derived the explosion properties for each SNR in the sample and found overall low explosion energies (<10^51 erg). To address their progenitor mass, we compare the measured abundances from our spectroscopic modelling to five of the most widely used explosion models and a relatively new electron-capture supernova model. Additionally, we explore degeneracy in the explosion energy and its effects on the progenitor mass estimates. However, no explosion models match all of the measured ejecta abundances for any of the SNRs in our sample. Therefore, we present our best progenitor mass estimates and find overall low progenitor masses (<=25 solar masses) and we highlight the discrepancies between the observed data and the theoretical explosion models.

Venue: via Zoom

Event Official Language: English

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ABBL-iTHEMS Joint Astro Seminar

Early Formation of Dark Matter Halos

November 24 (Fri) at 14:00 - 15:15, 2023

Derek Beattie Inman (Research Scientist, iTHEMS)

Cosmological observations have led to an extremely precise understanding of the large-scale structure of the Universe. A common assumption is to extrapolate large-scale properties to smaller scales; however, whether this is correct or not is unknown and many well-motivated early Universe scenarios predict substantially different structure formation histories. In this seminar I will discuss two scenarios where nonlinear structures form much earlier than is typically assumed. In the first case, the initial fluctuations are enhanced on small scales leading to either primordial black holes clusters or WIMP minihalos right after matter-radiation equality. In the second, I will show that an additional attractive dark force leads to structure formation even in the radiation dominated Universe. I will furthermore discuss possible observations of such early structure formation including changes to the cosmic microwave background, dark matter annihilation, and when the first galaxies form.

Venue: Seminar Room #359, 3F Main Research Building, RIKEN / via Zoom

Event Official Language: English

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