Volume 183

iTHEMS Weekly News Letter

Press Release

Takashi Okada thumbnail
Atsushi Mochizuki thumbnail

Origin of Diverse Response Patterns in Signal Transduction - Determining Response Properties by Integrating Experiment and Theory

2022-01-24

The ERBB family of receptors, consisting of ERBB1, ERBB2, ERBB3, and ERBB4, is a group of receptors that receive external signaling molecules. When the ERBB receptors receive signaling molecules, they bind to one another and induce phosphorylation reactions, leading to macroscopic responses such as cell proliferation and differentiation. However, it is difficult to measure the details of the binding and phosphorylation reactions of the ERBBs, and it has not been known how the various responses to signals are produced.

In this study, we conducted experimental measurements using cells with various compositions of ERBBs and multiple signaling molecules and constructed a mathematical model, which incorporates all possible reactions of ERBBs. By applying the mathematical model, we succeed in explaining and predicting the experimental results on phosphorylation responses. Furthermore, we identified the reactions that play an essential role in the diversity of the phosphorylation responses. Our findings may allow us to control cell responses such as proliferation and differentiation in the future.

For more details, please see the press release article from Kyoto University at related links.

Reference

  1. Takashi Okada, Hiraku Miyagi, Yasushi Sako, Michio Hiroshima, Atsushi Mochizuki, Origin of diverse phosphorylation patterns in the ERBB system, Biophysical Journal 121, 1–11 (2022), doi: 10.1016/j.bpj.2021.12.031

Seminar Report

NEW WG Seminar by Mr. Tomohiro Tanogami on January 20, 2022

2022-01-25

Tomohiro Tanogami from Kyoto University gave a talk titled "A simple XY model for cascade transfer." Cascade transfer is a ubiquitous phenomenon that appears in various physical systems. During a cascade transfer an inviscid conserved quantity such as energy is transferred conservatively from large/small to small/large scales, which results in a universal scaling law in the spectrum (e.g., Kolmogorov energy spectrum). In the talk, Tomohiro proposed a simple XY model which shows inverse energy cascade with a non-Kolmogorov energy spectrum and pointed out that the model may characterize a novel "universality class" of cascade transfer. Tomohiro also explained possible relations between his model and, e.g., spin and atmospheric turbulences. About 20 physicists have joined the seminar and enjoyed discussions from various viewpoints.

Reported by Hidetoshi Taya

Upcoming Events

Seminar

iTHEMS Math Seminar

Recent progress on dualities in W-superalgebras

January 28 (Fri) at 16:00 - 18:00, 2022

Shigenori Nakatsuka (JSPS Fellow, Kavli Institute for the Physics and Mathematics of the Universe (Kavli IPMU), The University of Tokyo)

Vertex superalgebras are algebras which describe the chiral part of two dimensional superconformal field theory. A rich and fundamental class is provided by the affine vertex superalgebras associated with simple Lie superalgebras and the W-superalgebras obtained from them by cohomology parametrized by nilpotent orbits. Historically, the W-algebras associated with simple Lie algebras and principal nilpotent orbit have been studied intensively and are well-known to play an essential role in the quantum geometric Langlands program. In particular, they enjoy a duality, called the Feigin-Frenkel duality, which is a chiral analogue of the isomorphism between centers of the enveloping algebras of simple Lie algebras in Langlands duality.

Recently, physicists found a suitable generalization for other types of nilpotent orbits from study on four dimensional supersymmetric gauge theory. In this talk, I will report the recent progress on our understanding of dualities in W-superalgebras since then in terms of several aspects: algebras, modules, and fusion rules.

Venue: via Zoom

Event Official Language: English

External Event

 thumbnail
Ade Irma Suriajaya thumbnail
 thumbnail

RIKEN AIP-Suri-joshi Joint Seminar

January 29 (Sat) at 15:00 - 16:40, 2022

Ryosuke Iritani (Research Scientist, iTHEMS)
Ade Irma Suriajaya (Assistant Professor, Faculty of Mathematics, Kyushu University)
Motoko Kato (Assistant Professor, Faculty of Science, Ehime University)

"What are the personalities of AI and mathematical researchers? What kind of work do researchers do?" The RIKEN Center for Integrative Research on Innovative Intelligence (RIKEN AIP) and "Suri-joshi" are planning a joint event that will give high-school girls who are interested in mathematical scientists an opportunity to learn more about the fascinating work of AI and mathematical researchers.

Venue: via Zoom

Event Official Language: Japanese

Workshop

 thumbnail
 thumbnail

Co-hosted by iTHEMS

Towards the Use of Data Assimilation for COVID-19 Investigations

February 14 (Mon) at 13:00 - 17:30, 2022

Catherine Beauchemin (Deputy Program Director, iTHEMS)
Takemasa Miyoshi (Team Leader, Data Assimilation Research Team, RIKEN Center for Computational Science (R-CCS))

This workshop aims to present recent investigations related to mathematical modeling of COVID-19 spread and impacts, and to foster the use of data assimilation techniques in future studies. It also aims to facilitate interactions and discussions among researchers from different fields such as epidemiology, economics, and mathematics. This workshop is jointly hosted by RIKEN Data Assimilation Research Team and by Nagoya University Graduate School of Mathematics, and supported by FY2021 RIKEN President's Discretionary Funds for COVID-19. A hybrid meeting is planned, but depending on the situation, an online version will be organized. Young researchers and students are encouraged to attend.

Program:
13:00 - 13:10 Opening
13:10 - 14:00 Hiroshi Nishiura (Kyoto University)
(35 min + 15 min Q&A) TBD

14:00 - 14:50 Catherine Beauchemin (RIKEN iTHEMS)
(35 min + 15 min Q&A) The straight line: simple and effective

14:50 - 15:10 Break

15:10 - 16:00 Taisuke Nakata (The University of Tokyo)
(35 min + 15 min Q&A) Balancing NPIs and Economic Activities

16:00 - 16:50 Qiwen Sun (RIKEN Data Assimilation Research Team, Nagoya University)
(35 min + 15 min Q&A) Analysis of COVID-19 in Japan with Extended SEIR model and ensemble Kalman filter

16:50 - 17:30 Discussion

Venue: Hybrid Format (RIKEN R-CCS room 107 and Zoom)

Event Official Language: English

External Event

Naritaka Oshita thumbnail

RIKEN Day: Let's Talk with Researchers! "Listening to the Ringing of a Black Hole"

February 25 (Fri) at 18:00 - 18:30, 2022

Naritaka Oshita (Special Postdoctoral Researcher, iTHEMS)

In the February RIKEN Day, we will have a talk with Naritaka Oshita, a researcher who is researching on the theme of "Listening to the Ringing of a Black Hole."

See related links for details.

Venue: via Zoom

Event Official Language: Japanese

Paper of the Week

Week 5, January 2022

2022-01-27

Title: Gopakumar-Vafa type invariants of holomorphic symplectic 4-folds
Author: Yalong Cao, Georg Oberdieck, Yukinobu Toda
arXiv: http://arxiv.org/abs/2201.10878v1

Title: Universal Properties of Weakly Bound Two-Neutron Halo Nuclei
Author: Masaru Hongo, Dam Thanh Son
arXiv: http://arxiv.org/abs/2201.09912v1

Title: On the evolution of the Hubble constant with the SNe Ia Pantheon Sample and Baryon Acoustic Oscillations: a feasibility study for GRB-cosmology in 2030
Author: Maria Giovanna Dainotti, Biagio De Simone, Tiziano Schiavone, Giovanni Montani, Enrico Rinaldi, Gaetano Lambiase, Malgorzata Bogdan, Sahil Ugale
arXiv: http://arxiv.org/abs/2201.09848v2

Title: Foundations and Applications of Quantum Kinetic Theory
Author: Yoshimasa Hidaka, Shi Pu, Qun Wang, Di-Lun Yang
arXiv: http://arxiv.org/abs/2201.07644v1

Title: Global study of the scalar quasi-normal modes of Kerr-AdS${}_5$ black holes: Stability, thermality, and horizon area quantization
Author: Issei Koga, Naritaka Oshita, Kazushige Ueda
arXiv: http://arxiv.org/abs/2201.07267v1

If you would like to cancel your subscription or change your email address,
please let us know via our contact form.